| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1923 |
|---|
| Symbol | |
|---|
| ID | 4459760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 2345308 |
|---|
| End bp | 2346111 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639702690 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_846043 |
|---|
| Protein GI | 116749356 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00288713 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT TCTATGCGAA CAAGGTTGCG GTGGTGACGG GCGGTGCCTC GGGCATCGGC
CTGGCGATGA CGGAGCTGAT GCTGGGGTTC GGGGCCGTGG TGATCATGGC GGACATCAAC
GAAACCGGGC TGAACGCCGA ATCCGCCCGG CTGGAGGAAC AGTACCCGGG CAAGGTTTTC
GCCAGGAAGA CGGATATCGG CAAAGCCGAT GAGGTGAAGG CGCTGGTGGA TCATGCCGTG
GAAAAGGGCG GCCGGCTGGA TTTGATGTTC AACAACGCCG GGCTCGGGTT GACGAAGCCG
ATCGACCAGA TCACCATGGA CGACTGGAAA TTCGCCTTCG ATGTGAACTT TTACGGCGCG
TTGTACGGCA CCCTGGAGGC GCGACGGGTG ATGCGCGCGC AGGGCGGCGG CGGGCATATA
GCGAACACGG CCTCGGGCAT CGCATTTGCC CCGATGCCGC TGCAGGCCAT GTACAGCGCG
ACGAAGGCGG CGCTGCACGC GCTGACGCTC TCCCTGCGGG CCGAATGCTG GGACGAGAAC
ATCTTCCTGC ATTCGGTGAT ACCGGGCACC GTGGCCACTC CGATATTCGC GGGGTCCCGG
GTTCCGAAAG GCGCCTTGAA GCCGGAGGAA TCGGCACGCG TCATCCTTGA GAAAGTGAAG
GATAATATGA GGATCGTCTT TGTCACTTCC AGCGACATGG ACGGCGCGAA GAACTGCAAC
CATCCGGATC TGCAGCCGTT CATGGACGAT TATTTCAACC ATATCGCCGC GGCCCGGAAG
GCCGGCAATT ACACCGCCAT GTAG
|
|---|
| Protein sequence | MKTFYANKVA VVTGGASGIG LAMTELMLGF GAVVIMADIN ETGLNAESAR LEEQYPGKVF
ARKTDIGKAD EVKALVDHAV EKGGRLDLMF NNAGLGLTKP IDQITMDDWK FAFDVNFYGA
LYGTLEARRV MRAQGGGGHI ANTASGIAFA PMPLQAMYSA TKAALHALTL SLRAECWDEN
IFLHSVIPGT VATPIFAGSR VPKGALKPEE SARVILEKVK DNMRIVFVTS SDMDGAKNCN
HPDLQPFMDD YFNHIAAARK AGNYTAM
|
|---|
| |