Gene Sfum_1909 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1909 
Symbol 
ID4459780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2328598 
End bp2330796 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content65% 
IMG OID639702676 
ProductRecD/TraA family helicase 
Protein accessionYP_846029 
Protein GI116749342 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.564024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000014529 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCGGAAC AAATCAGAGG CTTGGTGGAA CGCCTCACCT ACAGCGCGGA GGAGAACGGG 
TACAGCGTCC TCAAGGTCAA AATCCCGGGC AGGCGGGAAC TCGTGACGGT AGTGGGGAAT
TTCGTGTCGG TGACCCCCGG CGAGGTGCTC CTCATGGAAG GTTCCTGGAC GGTGCATTCC
CGTTTCGGGG AGCAGTTCCA GGTGGAGCGC TACGAGACGA CGATGCCGTC CACCGAGGTG
GGCATCCGCA AGTACCTGGG ATCCGGACTG ATCCGGGGTA TCGGGGCCAA GATGGCGGAC
CGCATCGTGG ACCGTTTCGG GGTGGATACC CTGGAAGTGA TCGAAAACGA ACCCGAACGG
CTGCGGGAGG TCGAGGGGAT CGGGGCGTAC CGGCTGGACC GGATCCGCAA GGCGTGGGAG
GAACAGAGGG ACATCCGCGA CGTGATGGTT TTTCTTCGGA CTCACGGCGT CAACGCGGCG
TATGCGGCCC GCATTTTCAA GCACTATGGC AAGAGCTCCC TGGAAGCGGT CAAGGAGAAT
CCCTACCGGC TGGCCATGGA CGTATCGGGG ATCGGCTTCC TCACCGCGGA CCGGATCGCG
CAGAGCCTGG GTTTTACGGC GGACTCCCCG CTGCGGGCCG AGGCGGGCGT CCTGTTCGTG
CTCCACCGCA GCTCGGAGGA GGGGCACGTG TGCGTTCCGC ACGAATGGCT GGTCGAACAA
TGCCGGGAGT TGCTCCAGAT TCCGTCCGAG GTGCTCCGGG ACGCCGTGTC CCGGCTGACG
GCCGACCGGA GGCTGGTCCA GGAGTCCCTG CCGCCTCAAG CCGCAACCCG TTTCGGTGAG
GATCGGGCCG TCACCCTGCG GGGCTACCAC GTGGCGGAAA CCGAAGTGGC CCGGCGGCTC
ACCCAGCTGC AGACGTACCG GCCGTTCCGG CGCGGGGTGG ACCCGGAGGC GGCGGTCAAA
TGGCTGAAGA ACAAACTGCC CTTCAAGCCG GCTCCGCTGC AGGAAGAGGC GGTGAAGCGC
GCCTTGACCG ACAAGGTCGT GGTGATCACG GGCGGCCCCG GCACCGGGAA GACGACCCTG
GTCCGGGCGA TTCTCGCCGT CTTCAGGGAA ATGCACGCGC GGATATGCCT GGCCGCGCCG
ACGGGGAGGG CGGCCAAGCG GTTGAGCGAA ACCACCCGGT ACTCCGCCGG GACGATTCAC
CGGCTGCTCG AATACAGCCC TCAGGCCGGC GGTTTCGTCC GCAACGAGCT CAAACCCCTC
CCGGCGGATC TCGTCATCGT CGACGAGACC TCCATGCTCG ACCTTCTGCT CATGCATTAC
CTGCTCAAGG CGGTGCCGCC CCAGGCGACC CTGGTGCTGG TGGGCGACGC GGACCAGTTG
CCTTCGGTGG GGCCGGGGAA CGTGCTCAAG GACATCATCG ATTCGGGGCG ATTTCCCGTG
GTGAGACTCG ACGAAGTCTT CCGCCAGGCC AGGCAGAGCC GCATCGTGGT CAACGCGCAC
CTGGTGCGGC AGGGGAAGTT CCCGCAAATG GAGAACGAGC GGGAGGGCCT GCAGGACTTT
TACTTCATTG CAAAGGAAGA CCCCGAGGAA GTGTGCCGCG TGATCCTCAA ACTGTGCACG
GAACGCATAC CGCAGCGGTT CGGTCTCGAC CCGGTGGAGG ACATCCAGGT GCTCAGCCCC
ATGCACCGGG GGGCCGTCGG CGCCCAGCGG CTCAACACCG CGCTCCAGGA GGCGCTCAAC
CCCGAAACCC GCTTCGTGCA GCGGGGAGAC CGGACCTTTC GGCTGCACGA CAAGGTCATG
CAGGTCCGCA ACAACTACGA CAAGGACGTC TTCAACGGGG ACCTCGGGCG CATCGCGAAG
ATCGACTTCG AAGAGCAGCT GGTGGAGGTG GATATCGACG GCCGGCGGGT CCCATATGAC
TTTTCGGAGC TCGACGAACT GGTTCTCGCC TATGCGGTCA GCATCCACAA GGCGCAGGGC
AGCGAATACC CGGCCGTTGT CTTCCCGCTG CTCACCCAGC ATTTCATGAT GCTTCGGCGC
AATCTCCTCT ACACCGCCAT CACCCGCGCC CGCAAGCTCG TGGTTGTCGT GGGGAGCAGG
AAGGCCCTCG CCATCGCCGT TCGGAACAAC GACACCGACC GGAGGTTCAC GCTGCTGCGC
GAACGTTTGG AAGGGGTCGT TTTCACGAGC CCGGAGTGA
 
Protein sequence
MAEQIRGLVE RLTYSAEENG YSVLKVKIPG RRELVTVVGN FVSVTPGEVL LMEGSWTVHS 
RFGEQFQVER YETTMPSTEV GIRKYLGSGL IRGIGAKMAD RIVDRFGVDT LEVIENEPER
LREVEGIGAY RLDRIRKAWE EQRDIRDVMV FLRTHGVNAA YAARIFKHYG KSSLEAVKEN
PYRLAMDVSG IGFLTADRIA QSLGFTADSP LRAEAGVLFV LHRSSEEGHV CVPHEWLVEQ
CRELLQIPSE VLRDAVSRLT ADRRLVQESL PPQAATRFGE DRAVTLRGYH VAETEVARRL
TQLQTYRPFR RGVDPEAAVK WLKNKLPFKP APLQEEAVKR ALTDKVVVIT GGPGTGKTTL
VRAILAVFRE MHARICLAAP TGRAAKRLSE TTRYSAGTIH RLLEYSPQAG GFVRNELKPL
PADLVIVDET SMLDLLLMHY LLKAVPPQAT LVLVGDADQL PSVGPGNVLK DIIDSGRFPV
VRLDEVFRQA RQSRIVVNAH LVRQGKFPQM ENEREGLQDF YFIAKEDPEE VCRVILKLCT
ERIPQRFGLD PVEDIQVLSP MHRGAVGAQR LNTALQEALN PETRFVQRGD RTFRLHDKVM
QVRNNYDKDV FNGDLGRIAK IDFEEQLVEV DIDGRRVPYD FSELDELVLA YAVSIHKAQG
SEYPAVVFPL LTQHFMMLRR NLLYTAITRA RKLVVVVGSR KALAIAVRNN DTDRRFTLLR
ERLEGVVFTS PE