Gene Sfum_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1906 
Symbol 
ID4459777 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2324965 
End bp2326824 
Gene Length1860 bp 
Protein Length619 aa 
Translation table11 
GC content64% 
IMG OID639702673 
Productintegral membrane sensor hybrid histidine kinase 
Protein accessionYP_846026 
Protein GI116749339 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.343997 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000148298 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAACGATA CAAAAACGAC GCACAACGAC TTTGCAGACA CCATCCGGGA GGAGCAGGTT 
CGCCTGGCGA TGCGGCAGCT TGCAACGATG CAGGCCGCTT CCTTCATCGT CGCCCTGGTC
CTGTGTTTCA TCGTCCGCAA TCAGGTCCCC TTGCCGAAAA TCCTCGTGTG GCTGTCGCTC
ATCCTGGCGG TTGTCGTCGG CCGGGTACAC CTTCATCGTC GATTCGTCAA GATACGGGAC
GGTTCTTTTC CCGGAAAGCA GTGGACGAAC GTTTACCTTG CCCTGGCCCT TTTTTCGGGA
ATCGTCTGGG GGCTGTCCGC CTTTCTGCTG TATCCGTCCG ACAACATGGC GCTGATGCCC
TTTTTCGTGC TCGTCATGGC CAGCCTCGCC GCCGCCACCA CGGTGTCGCA TTCCTCCATC
AAGCTCGCCC CCGCCGCATG GGCGGTGCCG GCCATGCTGT TCTACGCCGC GCGGTGCGTC
ATGGAAGGGG GACAGATCGG AGTCACGATC GCTTTTCTGA TCGTCGTCTA CCTGTTCACC
ATCGTTCGCT ATTCGTTCAC CCACAACAGC GCCATCACTT CGGCCATCGC GCTGAAATTC
GAGAACCTCA AGCTTCTCGA GGAGGTGCAG ACGGTCAACG AGAAGCTGCG CCGGGACATT
ACCGACCGCA AACGGGCGGA GGTCGAGCGG CTCGAAATGG AACGACGGCT GCTCCACGCC
CAGAAGCTCG AGAGCCTCGG CGTCATGGCC GGCGGCATCG CCCACGACTT CAACAATCTC
CTCATGGCCA TCATGGGAAA CCTGGACCTG ACCCTCCTGG ACCTCCCCAA CGATTGCCGC
GCCCGCACCT GCGTCGAGCA GGCCTACAAG GCAAGCCGCC GGGCGGGGGA GCTGACGAGC
CAGATGCTGG CCTATTCCGG GAAAGGGCAC CTGCGGCCCT CTCCCATGGA CCTCAGCGAC
GAGGTGCGCA AGAACGCGCA GCTCTTCCGC GCCGCCATTG AGCGGACCAT CACCCTGGAG
GTTGCGCTGA GCTCCCGGCC GGCCACCGTC GAGGCCGATC CGGGCCAGAT TCAGCAGGTC
GTCATGAACC TCATCACCAA CGCCTCCGAA GCCATCGGCC AGAACCCCGG CGGGATCGCC
ATCACCACGG GGACGATGGA TTGCGACGAG GAGTGCCTGA GTCGAAGCTG CCTGGACGAA
AAGCCTCCCC CGGGACGCTT CGCCTACATC GAGGTGTCGG ATACGGGCTG CGGAATGGAC
GAGAAGACCC GGCAGCGCCT TTTCGACCCC TTCTTCACCA CCAAGTTCAC GGGCCGAGGC
CTCGGGATGT CCGCGGTTAT GGGGATCGTG CGGGGTCACA GGGGGGCCAT CCTGGTGGAG
AGCGAGGTGG GCTGGGGAAC CACTGTCCGG GTGCTGTTCC CCGCCTGCGA ACCACCCGTT
TCCGCGGCCC CCGAGCTCCC GGCCGCGGCG GCAAGCGAGC CGCCCATGAT GGGGTCGGTC
CTGGTGGTCG ACGACGAACA CGGGATTCGC GAGCCGTGCA TGGCTCACGT GGAGCGGCTC
GGGTTCCATG CCGTGGGAGC CGCGGACGGC GAGGAGGCTT TGCGGCTCTT CCGGGACAAC
GCAAAGGAAT TCGTCTGCGT GCTTCTCGAT TTGACCATGC CCCGCATGAG CGGCCTGGCC
GCATACCAGG AGTTGAAGCG GATACGGCCG GACGTCCCGG TGATCCTCTG CAGCGGCTAC
GGCGAAGAGG ATGCCACCAA TCGCTTCGCC GGGCAGAAAC TGGCCGGCTT CCTCCACAAG
CCCTATACCC TCGAGGAGCT CAAGCAAAGC CTGACCCGGG CGCTCAACGC GGCCGCCTGA
 
Protein sequence
MNDTKTTHND FADTIREEQV RLAMRQLATM QAASFIVALV LCFIVRNQVP LPKILVWLSL 
ILAVVVGRVH LHRRFVKIRD GSFPGKQWTN VYLALALFSG IVWGLSAFLL YPSDNMALMP
FFVLVMASLA AATTVSHSSI KLAPAAWAVP AMLFYAARCV MEGGQIGVTI AFLIVVYLFT
IVRYSFTHNS AITSAIALKF ENLKLLEEVQ TVNEKLRRDI TDRKRAEVER LEMERRLLHA
QKLESLGVMA GGIAHDFNNL LMAIMGNLDL TLLDLPNDCR ARTCVEQAYK ASRRAGELTS
QMLAYSGKGH LRPSPMDLSD EVRKNAQLFR AAIERTITLE VALSSRPATV EADPGQIQQV
VMNLITNASE AIGQNPGGIA ITTGTMDCDE ECLSRSCLDE KPPPGRFAYI EVSDTGCGMD
EKTRQRLFDP FFTTKFTGRG LGMSAVMGIV RGHRGAILVE SEVGWGTTVR VLFPACEPPV
SAAPELPAAA ASEPPMMGSV LVVDDEHGIR EPCMAHVERL GFHAVGAADG EEALRLFRDN
AKEFVCVLLD LTMPRMSGLA AYQELKRIRP DVPVILCSGY GEEDATNRFA GQKLAGFLHK
PYTLEELKQS LTRALNAAA