Gene Sfum_1900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1900 
Symbol 
ID4459806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2317186 
End bp2319117 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content38% 
IMG OID639702667 
Producthypothetical protein 
Protein accessionYP_846020 
Protein GI116749333 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00116565 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000151331 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACCGATC AGCTCACCAC CCTTGTTAGC CTTGCAATTT TAAAAGTTGA TTTGGATGAG 
ACAAATCGTG ATTATTTAGA TTATATGCAA TCATTGGTAG TTCACGTTCT AAACGCACAT
AAACCCGATT TAGTAACTGA TGATATTATT AGTCAATTAT TACTTCAAGA TTTTGGCCTT
CAAATTCCCT TGCGTGGTTC TCAACTGGTC CTTCGGAGAA TGGTTAAAAA GGGGTTGCTC
CAAAAAACAA ATAATTTATA TACTATTAGT GGCAATTTAC CATTAGTGGA CTTTCACGAA
AAGCGCAAGA GTGCACAGCG TAATATATCA GATGTTTATG AGCATCTAAA ATTGTTTGTT
AAATCAATAT ATGGTTTTGA TTGGTCCGAA AGTGATATAT CTAGAGCATT ATTTGCTTTT
CTCAGCAGGT TTGGCGTTGA TTTTTTGAGA GCATATGTTT TTAAGACTTC GCTACCCCAT
GTCCCTCTAT CTGCACCACG AGAACAATAT ATAGTAGGAA AATTTATCAA AACTTTGCAT
GAGGAAGATA ACCCAGTTTT TGATAGCGTA ATAATTTTGG TCAAAGGACA TATGTATTCA
AATGCTCTAG TCTGCCCAGA TCTAGAATCG ATTGAAAAAA AGTTCAATAA ACTCACTTTT
TATATTGATA CAGCGTTAGC TCTTAATTAT TTAAAGCTAC AAGGGGATGA AGAACATCAG
ATTGCTGAAG AATTGTTTTC CTTGATTCGT CATCTGAAGG GGAAAATAGC GATATTCGAG
CACACTATTG ACGAGATCCG TAGAGTTCTC TTGGGGGCTG AACAGAAATT GGACGATCCA
CTCGCAGAGG GTAAGCTGAT TCAATCTATG CGGAGAAATG AATATAAAAG AAGTGAATTA
ATACTTCTTC GCGAGAATTT AATTGAACAT CTTAAAGAAC AGAAATTTAT TATTCTCCCC
ACCCCAGCTT ATAAGATAGA TCTGCAAATC TCAGAAGCAG AGCTAGAAGA AGCGATAAGC
TCCAAAGTCC ACTACAGAAA TCCTGATGCC ATTAAGCATG ATATCAATTC AGTTAGAAGC
ATTTATGTAC TACGTGGTGG AAAAGTGCCA AGAAGACTGG AGGATGCAGT AGCCGTTTTT
GTCACGACAA ATACGAGCTT TGCTGAAGCA GCTTTTGAAG TTGGAAAGAA TCATAATTCA
ACAAAAGAGG TTTCGAGTGT AATCACCGAC TACAGCCTCG CAAATGTTGC ATGGTTGAAA
GCCCCACTTG GAGCCCCTGA ACTTCCAACC AAGGAGCTTA TGGCTGCGTG TTACGCGGCG
ATGGAGCCGA CTGCTTCTTT ATGGACCAAA TACTTAAGGG AACTCGATTT ACTCAGGCTA
AAGGGGACTT TAACGCCAGA TGATCACGCT TTGCTCAGGG CTTCCCCGGT GGTAGCCAAG
GAATTGATGG ATCTGACTCT CGGGAACGAG GAAGCACTTA GCGGAGGAAG TATCAGAATT
ATTCTTGAGC GGGTAAAAGC CGATTTGGTA AAAGAAAAGG AGCAAGCATT AGCAGTCGGA
GAGAAGGAGC TTCGCACAGT TACAGCGGAA AGAAATATTT TAAGGCTTGA AGCAGAAAAT
CTTAAAACAA ATATATTTTG GTATTCTCAA AAAATAGCTA AAATTTGTTT TCTATTGGTA
AAGGTGATTG CACTTATTTT ACTCTTTTTC ATTGCTTTTG CTAGTTCGTT CATAACTACT
CCTTTCGTTG TAAACTCAAG ATTTTACACC AGTATTTTTA ATATTTTGAT ATTGACTGGT
GGATTCTTGA CATTTCTAAA GTTCTTTTTT GATTTTTCAT TGCCTCGTTT TTTCAAGCAA
CAGGAAAAAT CTTTTGCGGC AAGGTTACAC AAGCTGCTTT CCGCAAAGTT CTTATCGAAA
ATCCCCAAAT AA
 
Protein sequence
MTDQLTTLVS LAILKVDLDE TNRDYLDYMQ SLVVHVLNAH KPDLVTDDII SQLLLQDFGL 
QIPLRGSQLV LRRMVKKGLL QKTNNLYTIS GNLPLVDFHE KRKSAQRNIS DVYEHLKLFV
KSIYGFDWSE SDISRALFAF LSRFGVDFLR AYVFKTSLPH VPLSAPREQY IVGKFIKTLH
EEDNPVFDSV IILVKGHMYS NALVCPDLES IEKKFNKLTF YIDTALALNY LKLQGDEEHQ
IAEELFSLIR HLKGKIAIFE HTIDEIRRVL LGAEQKLDDP LAEGKLIQSM RRNEYKRSEL
ILLRENLIEH LKEQKFIILP TPAYKIDLQI SEAELEEAIS SKVHYRNPDA IKHDINSVRS
IYVLRGGKVP RRLEDAVAVF VTTNTSFAEA AFEVGKNHNS TKEVSSVITD YSLANVAWLK
APLGAPELPT KELMAACYAA MEPTASLWTK YLRELDLLRL KGTLTPDDHA LLRASPVVAK
ELMDLTLGNE EALSGGSIRI ILERVKADLV KEKEQALAVG EKELRTVTAE RNILRLEAEN
LKTNIFWYSQ KIAKICFLLV KVIALILLFF IAFASSFITT PFVVNSRFYT SIFNILILTG
GFLTFLKFFF DFSLPRFFKQ QEKSFAARLH KLLSAKFLSK IPK