Gene Sfum_1893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1893 
Symbol 
ID4459799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2308621 
End bp2313555 
Gene Length4935 bp 
Protein Length1644 aa 
Translation table11 
GC content63% 
IMG OID639702660 
ProductPhage-related protein tail component-like 
Protein accessionYP_846013 
Protein GI116749326 
COG category[S] Function unknown 
COG ID[COG4733] Phage-related protein, tail component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0293426 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAT CCAAGGATCT TGTTGAAGGG ACAGCCCCCG TCCCGCCCGG GCACCTGCGG 
GTGGTGAGCG TCGATCACCC GTTCCGGCGA TCGGAGCGGC GCATCGACCT GGTCGAATGG
AAGCCGGGCA TGAGCCTCTC CGACGTCGTC GCATCGCGCG TCCCGGAAAA CCTCCCCGTG
AAGGTCTTCC TCGACGGCCT GGAGATCGCC CCCGGCGAGC GCTCCCGGGT TTATCCCATG
CCCGGCAGGC AGGTGCTCAT CGTCCCTGAG CTCGGCTTCG ACGACGGATT CAAGGGCATC
CTCCGGTTCA TCCTGCAGAT CGCCCTGGTG GCCGCGGGTT TCATCATGCA GGCGATGGGC
GTGCCGGGCT GGCTCATCTT CGGAACCATG CTCGTGGGCG GCATCCTCAT CAACGTGCTG
CTTCCTCCCC AGGCCCCCAA AAAGCCCGAC ACCGCCCTCG ACAGCCAGGC CTACAACTGG
GCGCCCCAGA ACACCGAGCA GCAGGGAGTC CCGGTCCCGC GCTGGTACGG CAAGAACCGC
ATCTACGGCA ACATCGTCGC AAGCCACATC GAAAACCGCG ACTCGACCCA GATTCTCAAC
GCCCTCATCT GCCTGGGGCT CGGACCGGTG AAAAGCCTCG GGGATTTTCG CATAAACGAC
CAGGCCATCA AGCACTTCAA GGCCGTGCAC GTGCGCGTCC GCTACGGCCG CCTAAACCAG
GCCCCCATCT CCGACTTCAA GAAGACCAAG ATCGAATACC CCGCCTCGGT CAAGGTGGTC
CACGGCTCCC CGTACACCTA CACGACCGTG GGAAACGATT TCGACGCCCT GGAAGTCGAT
ATCTCCTTTC CCGAGGGGCT CTGGCATTAC CCGCCCGAAA GCTCGGGCCT CGAAGGCTTC
GCCGTCCGGT TCCAGATCGC GGTGCGAAAG GTCGGAACCT CCACGTGGCA TCACATCGCC
CGGCAGCCCT CGGATGTTGC CGGGTACAAC AAGGTGTTCG TCTCCGGGGC CCGCTGGTCC
CTGGGCAAAT GGGTGGACCC GGGGGCCGAT CCCGACTGGA CGGGCCACGA AGGGGCGGAC
GTCTGGTTTG AAAACCTCGC CGGAACGTCG GGGTTCTACG ACCATTACGA AGGGGAGGTC
TATCCCGACC AGACCGAGCT GTTCTGGCAC TGGATCGGAG ACGACGGGGG CGAATACATA
GCCACTTCAA CCGATTCCTA CGAGGTCTGG CAGGATTATT TCGACGCCTT CGGCCAGAGC
GAGAAGCCCA GGCACTGGAC CATGCGCTAC CGGGTGCCGG ACGGCGAAAA GGGGCAATAC
CAGGTTCGGG TGACGCGGGT GACGCCCACG GCCACTCCCC AGAACCGGTA CGGCCAGGAC
ATGTATTTTG CGGGGGTGGC CGAGGTGCTG TGCGACCCCT TCGAATACCC CCGGCACGTG
CTGGTCGCCG TGAGCGCCCG GGCAACGGAC CAGCTCTCGG GGTCGCTGCG GTTTTCGTGC
GTCGGGGAGA TGGCCGTGAT CCGGGTCTTT GACGGATCGA GCTGGAGCAT CGAGTACTCG
AACAACCCGG CCTGGGTCGC CTACGACATC CTGAGCCAGC CCGTGATCGG AGGCGCGGGC
ACGGAGGCCA ATCCCTACAC CGTCTTGCGC TACGACGGTT TGCCTCCCGA GCGCCTCGAT
GCGCCAAAAT TCCTTGAATG GGCGCAGTAT TGCGACGAGA AGGTAAGCGA CGGCACGGGG
TCGCCCTTCA GCACCGCCGT CGCCTACGCC GTAAACGACA GGGTGCGCTA CGCGGGCAGG
ATATACATGT GCATCCAGGC GACCGCGGTC CCTTCGCCCC CGCCCACGGA TACGGCCTAC
TGGGCCGTAA CGAACGAAGG GCTTGAAAAG CGCATCACCT TCAACGGCGG CTTCGACTAC
GACACGTCCA TGTGGGAGGC CGTGGCGCGG GTCTGCCAGG TGGGCCGCGC GATTCCCGTC
TGGAACGGCT CCAAGCTCAC CGTCGCAATC GATAAGCCCG CCGATCCCGT GAACCTCTAC
ACGGTGGGAA ACATCGAGGA GTCCAAATTC CGGGAAATCT TCCTGCCCCT TGAGGAGCGG
GCGACGGAAA TCGAGGTCGA TTTCATCGAC GGCGAAACCT GGGAGCGGGA CAAGCTCACG
GTCTACCGGC CGGACATCGC GCGGTCGACC GGGTACCGGG CGGCGATCGA GCTCTTCGGG
GTGACGAAGC GCAGCGAGGC GTGGCGCGCG GGCATGTTCC GGCTCATGTG CAACAAGTAC
CTGGTCCGCA CCGTGGAGCT CGATCTCGAC GTCGAAGCCG TGAACGCGGA CATAGGAGAC
GTGGTCCACA TCCAGCACGA CGTGCCCCAG TGGGGCGAAG GGGGCCGGAT CGCCCCGGTC
CTTTCCTTCA CCTCCGGAGG CCCGTATGAA ATCAAGCCCG GCGACACCGT CATCGGGGGT
ACCTCCTGGG CGTCGGCGCG GGTTGTGGCG GTTGACGTCA CGTCCGGGTC CTGGGCCGCC
GGCACGGCCG CAGGCCGCCT CACCCTTGCC GGGCAGAGCG GGAACTTCGT CGCCGAAGAG
CTCAACGTGC TTGAAAACTT CGACGTGGCC ACGGTCATAG CCTCCCGGGT CACCCTGGAC
AAGGCGGTGA GCATCGAGGC GGGGCTCACC TGCAAGGTGA TCGTGCGCCT CTCCGGGGAC
TCCCTTGCAG AACGCATCGT AACCTCCGAG GCAGGATCGC ACGAGACCCT TTCCGTTTCG
GTTCCCTTCG ATCCGATCCC GGCGCCTTTC GACGTCTACG CCTTCGGGCA GGTCGACACC
ATCACGCGCC CTTTCCGGGT GCTTTCCATC AGGAAGTCGA TGGAGCAAAA ATGCACCCTC
TCCCTTATCG AATACCGCCC GGAGGTCTAC CAGTACGAGG ATTCGGCCCC GAACCCGGGG
AGTGCGGCGC AGCTCGCCCT CAAGGCCATG CAGCCCAGGC GGGTGAAACT GACCGAAATC
AGCGTCGACG GCCCCGGGGG CAGGCAGGTC AAGGGCATCG ACATCGATTT CGAACCCTGC
GCCGATCCGG CCTTCAAGCA CTACGAGGTG TGGTACCGCG TGGCCGGGCG CAAGGGAGAA
AAGGCCGAAT GGCTCTTTTC CGGGGTGGCC GACGGCTCTT CCTACCAGGT TCTCGGGGTC
GAGCGCCAGA CCCGCTACGC CGTGGCGCTC CTGCCGGTGG ACACGGCAAA CCGCAAGCTC
TTCATCGAAT ACGCCGCCTC GCGCTCCATC CTCATCCACG GCATCGAGCT CGCCGCCGAT
CTGCGCTACA AGACCGGAAC CACGGTGGAC GCCCTGGAAC CCGCAGAAGC CGGCGCGACT
TTGGGCTCGA CCCTCGGCAA CGGCTCCACC GTTCCCGGCA ACCTCAAGAA ATCCGACGGC
GCCACCCTGG TGACCGAACA GGATCTCTTC CTCGACGGCC TCTGGGCGCG CGCCATCACC
CTGACCGACG GCGGCTACTT TCGCACGGGC CTCTCCCCGG ACCCCAGGAT CATCATCAGC
AAGGGACAGA TCGCCGGCTA CTCCGATGAA ACCACCAAGG AATTCTACCT GCTGGCAAGC
ACCGGGAAGG CGTATCTGGG GGGCGGCAAT GTCATCCTGG AGAGCACTGG CGTCAGGATT
CTTCCTGTAA CCGGTCAAAC TTGGGACTCC ACTCGAAGTG TCAACTGGGG AACGAATGTT
TCCTATCCTA TCGCGCGGAT ATGGGCATGG AATGACACTT TCGACGATTC TCTGGTGATT
GAGGTCAACG GGGATTACCA CTTCTCTCAG GGCGGCCACA TGTATTTTAG GGCCTATGGG
GTGGGCTCCG GGAACCACAG TACGATCAAG TTCAATGCGT CAAACGACAG CTACGCCGTC
GCACTGGAAA TGAACACTGA AAGCGACGGG CGTTTCAGGG TCGATGCGGA TGTCATTCAA
TTGAAGACAA CACCTTCTGG CGGGGGAATC GTAAACATCG ATGCCTATAC GATATATCTC
GGTGGCGTGG TTACGATTCT GGCTGGGCAG ATTAAATCCA CCCTGGAAAC TGGAACGGCA
CCGATGACGG TTGCCTCGAC CACAAAGGTT ACGAACCTCA ACGCCGACCA GGTGGACGGC
AAAGACGCTG CCGATTTCTT TCCAATCAAT GGCGGCCAGC TCACCGGGGC GAACATATCC
CGGAATGTCG ACGACAGCTA TCTGAACGTG CATGGCGCCA CCAACGTGAC TTCCGGGGCT
GGGGTAACGC TCTACGGCCG CGATCATGCG ACTTGTGCCG GGAATATGTA CCTGACCTTT
GGCGGGTATG CGTCGACCGG CAAGCTCGTT ATCCGGAATC GCAACGCATC GGAATACAAT
AATGTGTTCG AGATTGATTC CGTCGGGAAC ATCGTCACGT CCGCGCTGCG GATCGGGGCC
TACGTCAACG ACTCATATCT CAGCATTTGC GCCGGGGAGG ATGGGCTCAA AGGGGCGTCG
CTTGTCATGT ACGGCCGCGC TCATGCATCG AGTCCCGGCG AGGCGTACCT GAATCTAGGC
GGATATACCC CTTACGGAAA GTTCACGATC CGGCAGCGCC TGACGGATGA GTCGCTGGTC
AACCTGTTTC TTTTCGACAA GGATGCAAAC CTCAGAATCG GCGGAACCAC GTTCGGCACG
AGCGCCGCGA GGGTGCTCTG CGTCGGCACG GGGACCGCGC CCACCAGCTC CCCGGCCGAC
GCCTTCCAGA TGTATTCAAA AGATATATCG GCCGGGAACG CCGCCCCGCA TTTCCGTCTT
GAAGGCGGCC CGGAGCTCAG GCTCTACCAG CAACCGCACA TTGCGGACCC GGATGCCGAC
TCCACGAGCT TGCAGACGGC CGTCAAGGCG ATCCTGGTCG CATTGGAAAA CATGAGGTTC
CTCGCAACAT CGTAA
 
Protein sequence
MSESKDLVEG TAPVPPGHLR VVSVDHPFRR SERRIDLVEW KPGMSLSDVV ASRVPENLPV 
KVFLDGLEIA PGERSRVYPM PGRQVLIVPE LGFDDGFKGI LRFILQIALV AAGFIMQAMG
VPGWLIFGTM LVGGILINVL LPPQAPKKPD TALDSQAYNW APQNTEQQGV PVPRWYGKNR
IYGNIVASHI ENRDSTQILN ALICLGLGPV KSLGDFRIND QAIKHFKAVH VRVRYGRLNQ
APISDFKKTK IEYPASVKVV HGSPYTYTTV GNDFDALEVD ISFPEGLWHY PPESSGLEGF
AVRFQIAVRK VGTSTWHHIA RQPSDVAGYN KVFVSGARWS LGKWVDPGAD PDWTGHEGAD
VWFENLAGTS GFYDHYEGEV YPDQTELFWH WIGDDGGEYI ATSTDSYEVW QDYFDAFGQS
EKPRHWTMRY RVPDGEKGQY QVRVTRVTPT ATPQNRYGQD MYFAGVAEVL CDPFEYPRHV
LVAVSARATD QLSGSLRFSC VGEMAVIRVF DGSSWSIEYS NNPAWVAYDI LSQPVIGGAG
TEANPYTVLR YDGLPPERLD APKFLEWAQY CDEKVSDGTG SPFSTAVAYA VNDRVRYAGR
IYMCIQATAV PSPPPTDTAY WAVTNEGLEK RITFNGGFDY DTSMWEAVAR VCQVGRAIPV
WNGSKLTVAI DKPADPVNLY TVGNIEESKF REIFLPLEER ATEIEVDFID GETWERDKLT
VYRPDIARST GYRAAIELFG VTKRSEAWRA GMFRLMCNKY LVRTVELDLD VEAVNADIGD
VVHIQHDVPQ WGEGGRIAPV LSFTSGGPYE IKPGDTVIGG TSWASARVVA VDVTSGSWAA
GTAAGRLTLA GQSGNFVAEE LNVLENFDVA TVIASRVTLD KAVSIEAGLT CKVIVRLSGD
SLAERIVTSE AGSHETLSVS VPFDPIPAPF DVYAFGQVDT ITRPFRVLSI RKSMEQKCTL
SLIEYRPEVY QYEDSAPNPG SAAQLALKAM QPRRVKLTEI SVDGPGGRQV KGIDIDFEPC
ADPAFKHYEV WYRVAGRKGE KAEWLFSGVA DGSSYQVLGV ERQTRYAVAL LPVDTANRKL
FIEYAASRSI LIHGIELAAD LRYKTGTTVD ALEPAEAGAT LGSTLGNGST VPGNLKKSDG
ATLVTEQDLF LDGLWARAIT LTDGGYFRTG LSPDPRIIIS KGQIAGYSDE TTKEFYLLAS
TGKAYLGGGN VILESTGVRI LPVTGQTWDS TRSVNWGTNV SYPIARIWAW NDTFDDSLVI
EVNGDYHFSQ GGHMYFRAYG VGSGNHSTIK FNASNDSYAV ALEMNTESDG RFRVDADVIQ
LKTTPSGGGI VNIDAYTIYL GGVVTILAGQ IKSTLETGTA PMTVASTTKV TNLNADQVDG
KDAADFFPIN GGQLTGANIS RNVDDSYLNV HGATNVTSGA GVTLYGRDHA TCAGNMYLTF
GGYASTGKLV IRNRNASEYN NVFEIDSVGN IVTSALRIGA YVNDSYLSIC AGEDGLKGAS
LVMYGRAHAS SPGEAYLNLG GYTPYGKFTI RQRLTDESLV NLFLFDKDAN LRIGGTTFGT
SAARVLCVGT GTAPTSSPAD AFQMYSKDIS AGNAAPHFRL EGGPELRLYQ QPHIADPDAD
STSLQTAVKA ILVALENMRF LATS