| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1788 |
|---|
| Symbol | |
|---|
| ID | 4459900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 2182923 |
|---|
| End bp | 2183948 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639702557 |
|---|
| Product | import inner membrane translocase, subunit Tim44 |
|---|
| Protein accession | YP_845910 |
|---|
| Protein GI | 116749223 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4395] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000825798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.448103 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AGGCCTTGTA CCTGGCCGTG TTGTTTTCGA TCATCGTCAT GTTCTGCGTT
GCCACGCTGC TGGAGTCCAG CGCCTGGGCA CGCGCGGGCG GCGGATCGTC CTCGGGAAGT
CGGGGCAGCC GCAGTTTCTC GGCGCCGAGC GCCCCTCCCT CGAGACCCTC CCCCGGCCCA
TCCCCCTCGA GCCCGGGGTT CGGAACGCCC GGTTCCAGGC AGATCCCCGG TTCCCCCCCA
CCGTCTACCG GTTTTTCCAG GAGTCCGTTC TGGCAGGGGA TGGCTGGAGG GCTTGCCGGA
GGGCTCATCG GCAATATGCT GTTCGGGGGG CGAGGCTACG CCGGTCCCGG AGGTGGTGGC
GGAGGCGGAT ACGGTGGACC CGGCCTGCTG GATTTGCTCA TCATCGGCGT GGGGATCTAC
TTCCTGATGA AATTCCTGAA ACGGCGACGG GAACAGCAGG CGGATACGCT CCTCTACAGT
GACTCGGGCA TGGCTCGTCC GCAGCAACCC TATTACGGCG GCGGAGGGCA ACCGGAGTAT
CTCCCGCCCG CGGACGACGT GGAACGCGGC TTTCAGGAGC TCAGACGTTT CGATCCCGGT
TTCAATGAGG AGAGCTTCAA AGAGACCGTT CAGGATCTCT TTTTCCGCAT CCAGGCGGGT
TGGATGAATC GCAGTCTCGA CGGTATCGAA GGGTTGCTCG CCCCCGAGAT GAAGGCATTT
TTTGCGAGTG AATTCGATCG GTTGAGAAGG TCCGGGCGAA TCAATAAACT GGAGAACATC
GCGGTGCGCA AGGTCGAGCC GAGCGAGGTC TGGCAGGAGG AGGGCAAGGA CTATGTGACA
GTGCTCTTTA CCGCCAATCT CCTTGACTAC ACGGTGGATG ACAAGACCGG CCAGGTGGTC
GAGGGGGACA AGCTGAATCC CGTCAAGTTC CAGGAATTCT GGACGTTCTG CCGGGATATC
GGCACTCAGC GTTGGCAGCT AACGGCCATC AATCAGATGA ATGAACCATT GCCGCACCTC
AATTAA
|
|---|
| Protein sequence | MKKKALYLAV LFSIIVMFCV ATLLESSAWA RAGGGSSSGS RGSRSFSAPS APPSRPSPGP
SPSSPGFGTP GSRQIPGSPP PSTGFSRSPF WQGMAGGLAG GLIGNMLFGG RGYAGPGGGG
GGGYGGPGLL DLLIIGVGIY FLMKFLKRRR EQQADTLLYS DSGMARPQQP YYGGGGQPEY
LPPADDVERG FQELRRFDPG FNEESFKETV QDLFFRIQAG WMNRSLDGIE GLLAPEMKAF
FASEFDRLRR SGRINKLENI AVRKVEPSEV WQEEGKDYVT VLFTANLLDY TVDDKTGQVV
EGDKLNPVKF QEFWTFCRDI GTQRWQLTAI NQMNEPLPHL N
|
|---|
| |