Gene Sfum_1647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1647 
Symbol 
ID4460052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2019144 
End bp2019713 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content55% 
IMG OID639702416 
ProductCheW protein 
Protein accessionYP_845769 
Protein GI116749082 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00542103 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGATTGC CTTCTCTTCT ATCAAGGGTA CCGCATACCC AGGAAGAAAT GATCCAAACC 
AAACAGCTGG TCAGCTTTCG CATCGGCGAG GAGGAATTCG GGGTGGACAT CCTGATGGTG
CAGGAGATCA TTCGACTGCC AACCATCACG CCCATACCCA ACGCACCTGA ATCCATCCTT
GGAATGATCA ATCTGCGCGG CAAGATCATT CCCATCATCG ATTTGAGGCA AAGGCTTCGA
ATTCGAGGGA ACATGCCCAC CGCAAACGAC CGTAGAACCC GGATCCTGAT CGTGGAAATG
GCCGGTCACG TGACGGGCTT CATCGTGGAT TCGGTGTCCG AGGTCATGAA GGTGGAAGTG
AGTCAAATCG AACCCACTCC CCACCTGGTG GTCTCCAGCA TCGACGCGGT CTATATCCAG
GGGGTCATCA AGCTGCCCAA CCGGCTCATC ATTCTTCTGG ATTTCCGCCA GATCCTGAAG
CCGCAGGAGG AAAGGGAACT GGCCCTGCTC GACAAGAAGG TCATAGCGGG AGACCTTCCG
GCCCCCGCTC AGGAATCGGA TAGTGTGTAA
 
Protein sequence
MRLPSLLSRV PHTQEEMIQT KQLVSFRIGE EEFGVDILMV QEIIRLPTIT PIPNAPESIL 
GMINLRGKII PIIDLRQRLR IRGNMPTAND RRTRILIVEM AGHVTGFIVD SVSEVMKVEV
SQIEPTPHLV VSSIDAVYIQ GVIKLPNRLI ILLDFRQILK PQEERELALL DKKVIAGDLP
APAQESDSV