Gene Sfum_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1616 
Symbol 
ID4460085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1971911 
End bp1973545 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content61% 
IMG OID639702385 
ProductTPR repeat-containing protein 
Protein accessionYP_845738 
Protein GI116749051 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2956] Predicted N-acetylglucosaminyl transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.797217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGGGC TCAAGTGGGT CGTCCCGATT CTATTGGCCG TGTGCGCGGG CATGGCTGCC 
GCAGGCAGTT TTTTGCCGGT TGCGTCCGGG GCTCAGAGCG ATCCGCAGAA AGCCAAAGTC
CTCGAGCCCA TCTCGTCGAG CGACCTCAAA CCCGTCCCCG TTCCCAAGCT CGACAACCTC
GAGAAGGCGG TGCGCGAACA ACTGGAGGAA GAGCAGAAAA AGGTCGATAC GGCGGTAGCC
ACCCGGAGCG CCGGAAGGCA GGAATGCGCC CAGGCATATG TCGAACTCGG CGAAATGTAC
CATGCCTATC AACTCAACGA CGCAGCCGAG GCATGCTATC GCAACGCCTT GACACTGGAC
CCGACTCGTG TGGAATGGAA CTACAATCTG GCTTTTCTTC TTCAATCGGT CGGCAGGTAT
CCCGAAGCAA TCGAACTCTA CGGGAAAGTG TGGCGGACCC AGCCCGATTC TTACGTTCTG
CCAATCCGTG TGGCGGAGTG CCATAAGAGC CTCAACCAGC TCAAAGAGGC GAAGGATGCT
TTGGAAGCGG CATGGCGGAT AAACCCGGAT GGACCTGCCG TATTGGCTCG AATGGGTGAG
ATTGCTCTCG AGGAAAAGCG GTATGAAGAC GCGGTGAAAT TTCTTTCTTC AGCCCTGGAC
AAGCAGCCAG CGGCGAACCT GATCCATTAC CAGCTGGCCA TGGCCTACAG GGGGCTCGGC
GATGCCGGGA AGGCGCGCGA ACACCTCGCG CAACGCGGAA TTGTGGGATT GCAGCCGCCC
GATCCGCTCA AGGAGCGGCT CGATAAGCTG GTAACCGGCT ACCGCGTGCA CGTCCTCACG
GGGCGACGCG CTTATGGGGC GGGACGTTTC GAGGAGGCGG CCGAGGCCTT CCAAAGGGCC
GTGGACGCCA ATCCTGATGA TGTGGGCGCC AGGATCAATC TCGCTGCGGC GCTGGCCGGT
CTGCAGAAGG TGCGGGAAGC GATGGAGCAA CTGCAGGAAG CAATTCGCCT GTCGCCGCAG
AATTCGACCG CGCACTTCAA TCTCGGCCTG CTGCGCTCGC ACATGGGTGA ATACGCGGAG
TCGATCAAGC ATTTCCGGAT CGCGCTCGAA GCAAGGCCCA ATGACCACCA GGCGCACGCG
GCCCTGGCCG ATGCCTTGGT TCGCGAAGGC AAATTCGGCG AGGCATTCGA TCAGTACAAG
GCGGCCGTCG ATCTCGAGCC CAACCTGACG GCGGCATGGC TGCAGATGAG CACGATGTTG
ACCGTGGCGG ACCAGCACGC CGAGGCGTTG GCGGTGCTCG CGGAAGCCCA CAGGCGCGTT
CCGAAGAATG GGCCGATCAA ACACGCCATC GCGCGGCAGT TGGCCGCATC CCCCGAACTC
AGGCTTCGAG ACGGCAGGCG TGCTCTGGAG ATGGCCATGG AAGTCTATGG GGAGCGTGCA
AACCATGAAC ATGCCCGCAC CGTGGCCATG GCCCATGCCG AGACGGACCA GTGCGGGAAG
GCCGTCGAAT GGCAGGAGCG CGCCCTCTCG CTCGCAAAGG AAGAATCCAT GCCCCCCGAA
GTGATGGTCA CGTTGAACAA AAACCTGGAT CATTTCAAGA CCCAGCGCCC GTGCAGGGTT
CCCGGGAAGC AGTAG
 
Protein sequence
MKGLKWVVPI LLAVCAGMAA AGSFLPVASG AQSDPQKAKV LEPISSSDLK PVPVPKLDNL 
EKAVREQLEE EQKKVDTAVA TRSAGRQECA QAYVELGEMY HAYQLNDAAE ACYRNALTLD
PTRVEWNYNL AFLLQSVGRY PEAIELYGKV WRTQPDSYVL PIRVAECHKS LNQLKEAKDA
LEAAWRINPD GPAVLARMGE IALEEKRYED AVKFLSSALD KQPAANLIHY QLAMAYRGLG
DAGKAREHLA QRGIVGLQPP DPLKERLDKL VTGYRVHVLT GRRAYGAGRF EEAAEAFQRA
VDANPDDVGA RINLAAALAG LQKVREAMEQ LQEAIRLSPQ NSTAHFNLGL LRSHMGEYAE
SIKHFRIALE ARPNDHQAHA ALADALVREG KFGEAFDQYK AAVDLEPNLT AAWLQMSTML
TVADQHAEAL AVLAEAHRRV PKNGPIKHAI ARQLAASPEL RLRDGRRALE MAMEVYGERA
NHEHARTVAM AHAETDQCGK AVEWQERALS LAKEESMPPE VMVTLNKNLD HFKTQRPCRV
PGKQ