Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_1616 |
Symbol | |
ID | 4460085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 1971911 |
End bp | 1973545 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639702385 |
Product | TPR repeat-containing protein |
Protein accession | YP_845738 |
Protein GI | 116749051 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.797217 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGGGC TCAAGTGGGT CGTCCCGATT CTATTGGCCG TGTGCGCGGG CATGGCTGCC GCAGGCAGTT TTTTGCCGGT TGCGTCCGGG GCTCAGAGCG ATCCGCAGAA AGCCAAAGTC CTCGAGCCCA TCTCGTCGAG CGACCTCAAA CCCGTCCCCG TTCCCAAGCT CGACAACCTC GAGAAGGCGG TGCGCGAACA ACTGGAGGAA GAGCAGAAAA AGGTCGATAC GGCGGTAGCC ACCCGGAGCG CCGGAAGGCA GGAATGCGCC CAGGCATATG TCGAACTCGG CGAAATGTAC CATGCCTATC AACTCAACGA CGCAGCCGAG GCATGCTATC GCAACGCCTT GACACTGGAC CCGACTCGTG TGGAATGGAA CTACAATCTG GCTTTTCTTC TTCAATCGGT CGGCAGGTAT CCCGAAGCAA TCGAACTCTA CGGGAAAGTG TGGCGGACCC AGCCCGATTC TTACGTTCTG CCAATCCGTG TGGCGGAGTG CCATAAGAGC CTCAACCAGC TCAAAGAGGC GAAGGATGCT TTGGAAGCGG CATGGCGGAT AAACCCGGAT GGACCTGCCG TATTGGCTCG AATGGGTGAG ATTGCTCTCG AGGAAAAGCG GTATGAAGAC GCGGTGAAAT TTCTTTCTTC AGCCCTGGAC AAGCAGCCAG CGGCGAACCT GATCCATTAC CAGCTGGCCA TGGCCTACAG GGGGCTCGGC GATGCCGGGA AGGCGCGCGA ACACCTCGCG CAACGCGGAA TTGTGGGATT GCAGCCGCCC GATCCGCTCA AGGAGCGGCT CGATAAGCTG GTAACCGGCT ACCGCGTGCA CGTCCTCACG GGGCGACGCG CTTATGGGGC GGGACGTTTC GAGGAGGCGG CCGAGGCCTT CCAAAGGGCC GTGGACGCCA ATCCTGATGA TGTGGGCGCC AGGATCAATC TCGCTGCGGC GCTGGCCGGT CTGCAGAAGG TGCGGGAAGC GATGGAGCAA CTGCAGGAAG CAATTCGCCT GTCGCCGCAG AATTCGACCG CGCACTTCAA TCTCGGCCTG CTGCGCTCGC ACATGGGTGA ATACGCGGAG TCGATCAAGC ATTTCCGGAT CGCGCTCGAA GCAAGGCCCA ATGACCACCA GGCGCACGCG GCCCTGGCCG ATGCCTTGGT TCGCGAAGGC AAATTCGGCG AGGCATTCGA TCAGTACAAG GCGGCCGTCG ATCTCGAGCC CAACCTGACG GCGGCATGGC TGCAGATGAG CACGATGTTG ACCGTGGCGG ACCAGCACGC CGAGGCGTTG GCGGTGCTCG CGGAAGCCCA CAGGCGCGTT CCGAAGAATG GGCCGATCAA ACACGCCATC GCGCGGCAGT TGGCCGCATC CCCCGAACTC AGGCTTCGAG ACGGCAGGCG TGCTCTGGAG ATGGCCATGG AAGTCTATGG GGAGCGTGCA AACCATGAAC ATGCCCGCAC CGTGGCCATG GCCCATGCCG AGACGGACCA GTGCGGGAAG GCCGTCGAAT GGCAGGAGCG CGCCCTCTCG CTCGCAAAGG AAGAATCCAT GCCCCCCGAA GTGATGGTCA CGTTGAACAA AAACCTGGAT CATTTCAAGA CCCAGCGCCC GTGCAGGGTT CCCGGGAAGC AGTAG
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Protein sequence | MKGLKWVVPI LLAVCAGMAA AGSFLPVASG AQSDPQKAKV LEPISSSDLK PVPVPKLDNL EKAVREQLEE EQKKVDTAVA TRSAGRQECA QAYVELGEMY HAYQLNDAAE ACYRNALTLD PTRVEWNYNL AFLLQSVGRY PEAIELYGKV WRTQPDSYVL PIRVAECHKS LNQLKEAKDA LEAAWRINPD GPAVLARMGE IALEEKRYED AVKFLSSALD KQPAANLIHY QLAMAYRGLG DAGKAREHLA QRGIVGLQPP DPLKERLDKL VTGYRVHVLT GRRAYGAGRF EEAAEAFQRA VDANPDDVGA RINLAAALAG LQKVREAMEQ LQEAIRLSPQ NSTAHFNLGL LRSHMGEYAE SIKHFRIALE ARPNDHQAHA ALADALVREG KFGEAFDQYK AAVDLEPNLT AAWLQMSTML TVADQHAEAL AVLAEAHRRV PKNGPIKHAI ARQLAASPEL RLRDGRRALE MAMEVYGERA NHEHARTVAM AHAETDQCGK AVEWQERALS LAKEESMPPE VMVTLNKNLD HFKTQRPCRV PGKQ
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