| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1516 |
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| Symbol | |
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| ID | 4460601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 1877588 |
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| End bp | 1878646 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639702282 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_845639 |
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| Protein GI | 116748952 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0065858 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGATG AAAAGAAGAG CCGGCGGGAG TTGGTGGAGG AACTCGCCCT GCTGCGTCGG
CGCGTCATCG AGTTGGAAAA CCTGCAGGAA AACCACAGAC GAGTGGAAGA GGCATTGCGG
GAAAGCGAGG AACGTTTCCG ATTCATGGCG GAAACGACGG GAGACGTGCT CTACCAGCTC
CGATACGACT CCATGAAATA CGACTACATG AGTCCCTCCA TTGTAAAACT CACCGGCCAT
TCGCCCGAGG AAATCGATGC CGTCGGGTTC AGGAAGCTCA TCGTCAGCAT CGAGGATCAT
GGAGAGAAAA ACCTCTCCAT GGAGGCAATC GCCAAGAACC GGCAGGACGG CAAGACCGGC
GAGTACCACG CGGACTACCG GGTGCAAACG AAGAGCGGCG AAGAAAAGTG GCTGGGGGAC
CATTCCTTCC CGTTGCGGGA CAGCTCCGGA CAGGTGATCG GGTCGGTTGG AATTCTCACC
GACATCACGC GGCGAAAGAA AATGGAGGCG AAGCTTCGAG AACTGAACAG GAAACTGGAG
CGTCTTGCCA CCCTCGACGG CCTGACCCGG GTGGCCAACC GGCGCAGCCT GGACCGGTTC
CTTGACCTGG AATGGCGGCG CACGCGGCGC GAGCGGGCAC CCATGGCGCT CATCCTCAGC
GACATCGATC ATTTCAAACT CTACAACGAC ACGTACGGCC ACCTCGCCGG GGATGACTGC
CTGCGGGCGG TGGCCACCGC CATCAAGGAA TGTGCGAAAC GTCCCATGGA CCTCGTCGCA
CGCTACGGAG GCGAGGAATT CGCCGTTGTC TTGCCTAACA CCAATGCGGA CGGAGCCGTC
CACATCGCCG AGACCATCTG CCGGGAGGTC GAGAACCTGC GCGTTCGTCA CCCGGAATCC
TCCACGGGTG AATTCTTGAC CCTGAGCTGT GGGGTCGCCG CCATGGTCCC GCGCGAGGAA
AGTACTCCCG AGGCGCTCGT CGCCGCAGCG GACGAAGCGC TTTACGAAGC CAAGAAGCAG
GGGCGCAACC GAGTCGTTTT GAAGGATCGA GGGCGGTAG
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| Protein sequence | MSDEKKSRRE LVEELALLRR RVIELENLQE NHRRVEEALR ESEERFRFMA ETTGDVLYQL
RYDSMKYDYM SPSIVKLTGH SPEEIDAVGF RKLIVSIEDH GEKNLSMEAI AKNRQDGKTG
EYHADYRVQT KSGEEKWLGD HSFPLRDSSG QVIGSVGILT DITRRKKMEA KLRELNRKLE
RLATLDGLTR VANRRSLDRF LDLEWRRTRR ERAPMALILS DIDHFKLYND TYGHLAGDDC
LRAVATAIKE CAKRPMDLVA RYGGEEFAVV LPNTNADGAV HIAETICREV ENLRVRHPES
STGEFLTLSC GVAAMVPREE STPEALVAAA DEALYEAKKQ GRNRVVLKDR GR
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