Gene Sfum_1516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1516 
Symbol 
ID4460601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1877588 
End bp1878646 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content61% 
IMG OID639702282 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_845639 
Protein GI116748952 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0065858 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATG AAAAGAAGAG CCGGCGGGAG TTGGTGGAGG AACTCGCCCT GCTGCGTCGG 
CGCGTCATCG AGTTGGAAAA CCTGCAGGAA AACCACAGAC GAGTGGAAGA GGCATTGCGG
GAAAGCGAGG AACGTTTCCG ATTCATGGCG GAAACGACGG GAGACGTGCT CTACCAGCTC
CGATACGACT CCATGAAATA CGACTACATG AGTCCCTCCA TTGTAAAACT CACCGGCCAT
TCGCCCGAGG AAATCGATGC CGTCGGGTTC AGGAAGCTCA TCGTCAGCAT CGAGGATCAT
GGAGAGAAAA ACCTCTCCAT GGAGGCAATC GCCAAGAACC GGCAGGACGG CAAGACCGGC
GAGTACCACG CGGACTACCG GGTGCAAACG AAGAGCGGCG AAGAAAAGTG GCTGGGGGAC
CATTCCTTCC CGTTGCGGGA CAGCTCCGGA CAGGTGATCG GGTCGGTTGG AATTCTCACC
GACATCACGC GGCGAAAGAA AATGGAGGCG AAGCTTCGAG AACTGAACAG GAAACTGGAG
CGTCTTGCCA CCCTCGACGG CCTGACCCGG GTGGCCAACC GGCGCAGCCT GGACCGGTTC
CTTGACCTGG AATGGCGGCG CACGCGGCGC GAGCGGGCAC CCATGGCGCT CATCCTCAGC
GACATCGATC ATTTCAAACT CTACAACGAC ACGTACGGCC ACCTCGCCGG GGATGACTGC
CTGCGGGCGG TGGCCACCGC CATCAAGGAA TGTGCGAAAC GTCCCATGGA CCTCGTCGCA
CGCTACGGAG GCGAGGAATT CGCCGTTGTC TTGCCTAACA CCAATGCGGA CGGAGCCGTC
CACATCGCCG AGACCATCTG CCGGGAGGTC GAGAACCTGC GCGTTCGTCA CCCGGAATCC
TCCACGGGTG AATTCTTGAC CCTGAGCTGT GGGGTCGCCG CCATGGTCCC GCGCGAGGAA
AGTACTCCCG AGGCGCTCGT CGCCGCAGCG GACGAAGCGC TTTACGAAGC CAAGAAGCAG
GGGCGCAACC GAGTCGTTTT GAAGGATCGA GGGCGGTAG
 
Protein sequence
MSDEKKSRRE LVEELALLRR RVIELENLQE NHRRVEEALR ESEERFRFMA ETTGDVLYQL 
RYDSMKYDYM SPSIVKLTGH SPEEIDAVGF RKLIVSIEDH GEKNLSMEAI AKNRQDGKTG
EYHADYRVQT KSGEEKWLGD HSFPLRDSSG QVIGSVGILT DITRRKKMEA KLRELNRKLE
RLATLDGLTR VANRRSLDRF LDLEWRRTRR ERAPMALILS DIDHFKLYND TYGHLAGDDC
LRAVATAIKE CAKRPMDLVA RYGGEEFAVV LPNTNADGAV HIAETICREV ENLRVRHPES
STGEFLTLSC GVAAMVPREE STPEALVAAA DEALYEAKKQ GRNRVVLKDR GR