Gene Sfum_1498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1498 
Symbol 
ID4460549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1854687 
End bp1856093 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content60% 
IMG OID639702265 
Producttype II secretion system protein E 
Protein accessionYP_845622 
Protein GI116748935 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAACT TTATGAACCG CAAACCCGAG CCGTCTTCCC GGGAAGAGAA CGACGCGGCC 
ATGGTCCGGG CCGAAGCGCC GGAAGAGCTC ATGCGCAGGA GAACCAGGAA GCGCAGCATC
ATTCCCAACG AGTACTACGA GCTGAAAACT CGAATCCACG ACCGCCTGAT CGACCTGATC
GACCTTTCGC TGCTCGACTC CCTCGACGTC AACGTGCTCA AGGTTCAAAT CAGGAAGCTG
GTGGAGAGAA TACTCCTCGA GGAGGAGAAT CAAATCCCGT TGAACCTCAA CGAGAGGGAT
CATCTCTTCC GGGAAATCCA GGACGAAGTC TTCGGATTCG GCCCCCTCGA GCCTTTCCTG
CAGGACCCGA CGGTGTCCGA CATCCTGGTG AACACGTACC GGCAAATCTA CGTGGAGCGC
TTCGGAAAGC TGGAGCTCAC CGAGGCGAGG TTCAAGGACG ACGGGCACCT CAGGAAGATC
ATCGACAAAA TCGTTTCGGC CGTGGGACGG CGCATCGACG AGTCCTCGCC GATGGTGGAC
GCGCGCCTCC CGGACGGCTC GCGCGTGAAC GCCATTATCC CGCCCCTTTC CCTCGGAGGC
CCGGCGCTTT CCATACGCCG CTTCTCGAGA GATCCGCTCG AGATGGGAGA CCTCATCACC
CTGAACACCC TGACGCCCGA AATCGGCGAA GTGCTCAAGG CCATCATCAA GGCGCGGCTC
AACGTCCTCA TTTCGGGGGG AACCGGCAGC GGGAAGACGA CCCTTCTGAA CGTTCTGTCG
CGGTTTATCC CCGAGGAGGA ACGGATCGTC ACCATCGAGG ACGCGGCCGA GCTTCAGCTC
AAGCAGACTC ACCTGGTCAG GCTCGAAACC CGCCCGCCGA ATATCGAGGG AAAGGGCGAA
GTGACCCAGC GTGAACTGGT GAAGAACACG CTGAGAATGC GTCCCGACCG GATCATCGTC
GGCGAGGTCA GGGGCCAGGA AGCTTTCGAC ATGCTCCAGG CCATGAACAC CGGTCACGAC
GGGTCGCTCA CCACCATTCA CGCCAACTCG CCCAGGGATG CCCTGATGAG GCTGGAGACC
ATGGTGGCCA TGGCGGGGCT GGAGATTCCG GGCGACTTTC TGAGAAGGTA CATCGCTTCG
GCCATCAACA TCGTGGGCCA GCTTTCCCGC CTGGCCGACG GAAGCCGCAA GCTCGTCAGT
CTCCAGGAAA TCACCGGCAT GGAAGGAAGC ATGGTGACCA TGCAGGAAAT CTTCACCTTC
GAGCAGACGG GGATCGACGC GGAGGGCAAG GTGAAGGGGA GATTCAAGGC GTGCGGCATC
CGGCCGAAGT TCGTGGAGAA ACTGGACGCC ATGAGCATCG CCCTCCCCAA AGGCATTTTC
GATCCCCGAA GAGTCAACGA CATCTGA
 
Protein sequence
MFNFMNRKPE PSSREENDAA MVRAEAPEEL MRRRTRKRSI IPNEYYELKT RIHDRLIDLI 
DLSLLDSLDV NVLKVQIRKL VERILLEEEN QIPLNLNERD HLFREIQDEV FGFGPLEPFL
QDPTVSDILV NTYRQIYVER FGKLELTEAR FKDDGHLRKI IDKIVSAVGR RIDESSPMVD
ARLPDGSRVN AIIPPLSLGG PALSIRRFSR DPLEMGDLIT LNTLTPEIGE VLKAIIKARL
NVLISGGTGS GKTTLLNVLS RFIPEEERIV TIEDAAELQL KQTHLVRLET RPPNIEGKGE
VTQRELVKNT LRMRPDRIIV GEVRGQEAFD MLQAMNTGHD GSLTTIHANS PRDALMRLET
MVAMAGLEIP GDFLRRYIAS AINIVGQLSR LADGSRKLVS LQEITGMEGS MVTMQEIFTF
EQTGIDAEGK VKGRFKACGI RPKFVEKLDA MSIALPKGIF DPRRVNDI