| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1464 |
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| Symbol | |
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| ID | 4461520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1814389 |
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| End bp | 1817808 |
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| Gene Length | 3420 bp |
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| Protein Length | 1139 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639702232 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_845589 |
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| Protein GI | 116748902 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0046229 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGGGGTT CATGTCTCGG GGGGGCGCTT CGTCGCATTT CCTGCAAGAC TGTCCGGAAA
AATAATGGCG AGAATGTTGT CGACCATTCG CGGAAAGCCG ATCGAGCAGG GTCATGCAGC
TCCCCCGCAA TGAACCCTGC GGTTCCTCTT CTTGAGTTTG TCAATGATAT CATAGTAATA
GTGCTTGCCA TCAACCTGCT GATCCTGATT CTGAGTCCCT TGCCGGCCCA TTCCCAGTCC
ATGCCGCAGC AACATGGGTC CTCTCCCCAG ACGATGAAAT GGGTGCTGAG CCTTGACACG
CATGGAGACG GTCACCCCGC ATATCGGAAA ACCGGCCCCG GTTTCCCGTG CGTCCTGACG
GCGGGCGACA TGAGCATCGA AGGTTCTCCC CCCCAACAAC ATGAGAGCTC GCGCAATAAC
GAATTGAAAT ACCGGGCGAA AACGGCCGGA CCGTTCCGGC TCGGATATGC CGCGGACAGC
GGGGCGGGGC CGCCGCCGGG GGACGATGTT TCAGAGGCCG CATCGAATGA GGAATCTTTT
CGGTGGGAAG CTTACCGATG GCAGTTCATA GGCATCGCGG CAATCATTTT CATCCAGACG
CTCTTCATAT TGATTCTGGT CGTCAACCTG CGCAAACGAC GCGCGGCGAA CCTGGCCCTC
CGCCATGCGG AATTGAAATA CCGCACCGTC GCGGACTTCA CCAGCGACTG GGAGTACTGG
TCCGCTCCGG ATGGTGTGCT TCATTACATT TCGCCTTCCT GCGAGCGCAT TACCGGTTAT
TCTGGACGGC GCTTTGTCGA CGACCCCGCG CTGCTTCGTG AGATCATCCA TCCGGAGGAT
CGAGAGGTCT GGGATGGACA TGAACGTGAT GAGCACGGGA AAGCCGAATC CCGGGGGGTA
CGGTTTCGCA TTCAAACACG CGATGGGGCC GTGCGCTGGA TAGATCATGC CTGCCAGCCG
GTGATTGGTG AGCAGGGCGA GTTCCAAGGG ATTCGGAGCA GCAACCGGGA CATCACGGAG
GAAAAACGGG CTGAGGAAGC CCTGGCCGCA CAGTTACGCT TTGAAACGCT GATTGCCCAA
ATCTCCGCGC GTTTCGTCAA TCTGGCTCCC GATCAGGTGG ACGCCGAAAT TCAGGAAGCC
CTGCGCCGTA TCTGTGAGTG CCTGGGCTTT GACCGTTCCA CCGTCTGGCA AGTCACCGGT
GGAGCGGATG GCCCGATGGT GATGACGCAC ATCCATCAAC CCGAGGACGG CCCGCCTGTT
CGAAAACCGG CGGTCGAGAG CCGACTGTCG AGCGGTGAGC GGGCAGACCG GATGTCGGAG
AGTCGGCTCA ATCTCATGCA CATGGAGGCG CAGGAGCATT TCCCCTGGCT AACAGAGCAG
GCTCGGCAGG GTCGGATTGT GCTCATCCCG AGACTGGAAG ACCTTCCGGC GGAGGCTTCC
TTCGACAAGG AGATGCTCGG CCGCTGGGGT GCCAGGTCCA CTTCGGTAAT TCCTTTCATG
GCGGGTGGAG TGGCCGTGGG AGCCATGACC TTTGCCATGA TGCGGCAGGA ACGGGAATTG
CGGGAGGAAC TCGTCAACAG GCTCAAGCTT TGCGCCCAGG TCTTCGCCAA CGCAATCGCG
CGCAAGCGCG CGGAGCAGAA GCTGCGGGAA AGTGAAGAGC GATTGAGCCT GGCGGCGGCA
TCGGCGAATG TGGGTCTGTG GAGCCTGGAT CGGTGCACCG GGCGCATGTG GGCCACGGAG
AAGACCAGGG AATTGCTGGG TTTTGCGCCG GGTGAGGAGC TTTCTTTCGA AAGGGTGCTC
TCCGCGGTGC ATGTCGAGGA TCGAGAGAAG GTTCGCCGGA CATTCGATCT CGCGATGCAG
CCGGGTGAAG ATGCACGTCT TGACTACCGC GTTGTGAATG GCGAAGGCGG CGTGCGATGG
ATCGCCTGGC GCGGCCGCTC CAGGCACAAT TCTCCCGGGA GGCCGAATGG CCTCATGGGC
GTTTCGGTCG ACATCACCGA TCGCAAGTCG GCGGAACTGT CCCTGCAACA ATCGGAGGAG
AAGTTTTCCA GGGCGTTCCA CGGCAGCCCG GTCGCCATGT CGCTGGTGTC TCTGAGCGAT
GTGCAGTACA TCGAGATCAA CAAGGCTCAC GAACGGTTCA CCGGGTACGC ACGCGATGAG
GTGCTCGGAC GCACTGTCGG GGACATGAGG CTATGGCTGG ATCCACAGGA ACTGGAAGCG
GCCGTGGAAA AGATCCGCAG CGATGGAAGC CTTCGCGCCC TGGAAGCCCG GTTCCGCACC
AAGGGGGGGG AACGGCGCAT GGGGTGCTTG TCGGCGGATT TAGTCGAATT TTCAGGACAA
AGGTGCATCC TTGCAGTGAT CGAAGACGTC ACCGAGCGCA AGCTCATGCA GGAGCAATTG
CAGAACAGGC TTCTGGAAAT CGAGAGGCTC AAGGGGCAGC TGGAACAGGA CAACATCGCC
CTGCGGGAGG AAGTGAGCCT GCTTTCCCCT CACGATGATA TTGTCGCTCG CAGTCCGGCC
ATGCGGCAGG TTCTGCTCAG AGTCGAACAG GTGGCTCCGA CGGACTCGAC CGTTCTCATC
ACCGGCGAAA CAGGCACGGG CAAGGAACTG ATCGCCCGGG CCGTCCACAA CCTGAGCGCC
CGAAAAGGGC GACCGCTGGT GACGGTCAAT TGCGCCTCAC TGCCGCCAAC CCTGATGGAG
TCCGAATTGT TCGGGCGCGA GAAGGGGGCG TACACGGGCG CCCTGTCCCG AATGGCGGGG
CGATTCGAGG TTGCCGACGG GGGGACCCTC TTTCTGGACG AGGTGGGTGA GCTTCCGCCT
GAGCTTCAAG CCAAGATGCT CCGCGTCCTG GAGGAAGGCC GCTTCGAGCG CCTTGGATCC
ACGAAGTCCC TGCACGTAAA CGTCCGCATA CTCGCAGCCA CAAACCGGGA CCTTGCGCAA
TTGGTCCAGG CGGGCAGGTT CCGGCGGGAC CTTTATTATC GTTTGAATGT ATTTCCCATT
GCGATTCCCC CCCTGCGCGA GCGTCCCGAG GATATTCCGC CGCTGGTCTG GGCTTTCATC
CACCAATTCG AGAAGCGCAT GGGCAAACAC GTTCAGCGGG TCTTGAAGAG AAGCATGGAT
GCCCTGGAGC GCCATGCCTG GCCGGGCAAC GTTCGGGAGC TCCGGAACGT CATAGAGCAT
GCGATGATTG TGAGCTCGGG TTCGACCCTC AAAGTGTTTC CACCGATGAT CCGGGCGGAG
GACTCGTCCG CGGAGGTGTT GAACCTCGAG GAATCGGAGC GGCGGCATAT CCTGCGCGTG
TTGACCCTGG CCGGGTGGCG CGTTGCGGGG AAGGGTGGGG CGGCCGAGAT CCTGGGACTC
AAGCCCACCA CGCTGGAGGC TCGGATGAAG AAGCTCGGAG TTCGCAGGCC CAGGTCATAA
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| Protein sequence | MRGSCLGGAL RRISCKTVRK NNGENVVDHS RKADRAGSCS SPAMNPAVPL LEFVNDIIVI
VLAINLLILI LSPLPAHSQS MPQQHGSSPQ TMKWVLSLDT HGDGHPAYRK TGPGFPCVLT
AGDMSIEGSP PQQHESSRNN ELKYRAKTAG PFRLGYAADS GAGPPPGDDV SEAASNEESF
RWEAYRWQFI GIAAIIFIQT LFILILVVNL RKRRAANLAL RHAELKYRTV ADFTSDWEYW
SAPDGVLHYI SPSCERITGY SGRRFVDDPA LLREIIHPED REVWDGHERD EHGKAESRGV
RFRIQTRDGA VRWIDHACQP VIGEQGEFQG IRSSNRDITE EKRAEEALAA QLRFETLIAQ
ISARFVNLAP DQVDAEIQEA LRRICECLGF DRSTVWQVTG GADGPMVMTH IHQPEDGPPV
RKPAVESRLS SGERADRMSE SRLNLMHMEA QEHFPWLTEQ ARQGRIVLIP RLEDLPAEAS
FDKEMLGRWG ARSTSVIPFM AGGVAVGAMT FAMMRQEREL REELVNRLKL CAQVFANAIA
RKRAEQKLRE SEERLSLAAA SANVGLWSLD RCTGRMWATE KTRELLGFAP GEELSFERVL
SAVHVEDREK VRRTFDLAMQ PGEDARLDYR VVNGEGGVRW IAWRGRSRHN SPGRPNGLMG
VSVDITDRKS AELSLQQSEE KFSRAFHGSP VAMSLVSLSD VQYIEINKAH ERFTGYARDE
VLGRTVGDMR LWLDPQELEA AVEKIRSDGS LRALEARFRT KGGERRMGCL SADLVEFSGQ
RCILAVIEDV TERKLMQEQL QNRLLEIERL KGQLEQDNIA LREEVSLLSP HDDIVARSPA
MRQVLLRVEQ VAPTDSTVLI TGETGTGKEL IARAVHNLSA RKGRPLVTVN CASLPPTLME
SELFGREKGA YTGALSRMAG RFEVADGGTL FLDEVGELPP ELQAKMLRVL EEGRFERLGS
TKSLHVNVRI LAATNRDLAQ LVQAGRFRRD LYYRLNVFPI AIPPLRERPE DIPPLVWAFI
HQFEKRMGKH VQRVLKRSMD ALERHAWPGN VRELRNVIEH AMIVSSGSTL KVFPPMIRAE
DSSAEVLNLE ESERRHILRV LTLAGWRVAG KGGAAEILGL KPTTLEARMK KLGVRRPRS
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