| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1428 |
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| Symbol | |
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| ID | 4460479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1767269 |
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| End bp | 1769353 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639702196 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_845554 |
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| Protein GI | 116748867 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0176599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.198216 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTGCCG TGTTATCATA TTCTTTCTAC GACTTTCTTG TCGAAGGGGT AAGGGCGATG
CCGGACCGCG AGAAAGCACA TGCCAGGATT GAGGCCTTGA GGGAGGAAAT CCGGCATCAC
AACTATCTCT ATTATGTCCT CGACCGTCCG GAAATCAGCG ATGAGGCCTA CGACGGGCTG
TTTCGCGAAC TGGTCCGTTT GGAAGAATCC TACCCGGCGC TCATCACGCC CGATTCGCCG
ACACAGAGGG TGGGGGCGGC CCCGGCCGAG AAATTCCTGC CCTTTCCCCA TACGATACCC
ATGTTGAGTC TCGAGAACGC GATGTCGGAG GCGGAAGTCT TCGAGTTTGC CCGTCGGGTG
CGGAAGATCC TGGGAGACAG GGGCGACGTC GACTTCATGG CGGAGCCGAA GATGGACGGG
CTGGCGGTTG AACTGGTCTA TGAAAACGGT GAGCTGACCG GTGCCGGCAC CCGGGGCGAC
GGGTATGTGG GAGAGGACGT GACACGCAAC GCAAAGACCA TAAGGGCGAT TCCCCTGAAG
CTCTACGCGG GTGCGGGGGG GGCTTCCCCG CCGGCTCGGA TTGCCGTCCG GGGCGAAGTC
TACATGGACA GGAAGGACTT TGCCGCCCTC AACAGGAGCC GCGAACAAGC CGGTGAGCCG
CTTTTCGCAA ATCCACGCAA TGCCGCGGCG GGATCGTTGC GTCAGCTCGA TCCTTCGGTC
ACCGCGGCGC GTTCACTGAA AGCTTTTTTC TACGGTGTGG GAGAAGTGTC GGGTTATCGC
TTCAAGACCC AGGCACAGAC CCTGGAGCAG CTCCGTCGGT GGGGTCTTCC CGTCAATCCT
CTGTCCAGGG TCTGCCCGTC CATCGAGGAT GCCGTGAGCT TCTACAATGA GATTGCGGCA
GGACGGGACG CTCTGCCTTT TGAAATCGAC GGCGTGGTCG TGAAGGTGAA TTCCATCGAG
TGGCAGGAAA TGCTTGGTGA AAAATCCAGA AGCCCCCGAT GGGCCATTGC GTATAAGTTT
TCGCCCCACC AGGCGCGGAC TCGGGTCCTC GACATCAAGG TGCAGGTGGG TCGGACCGGA
GTACTGACCC CGGTGGCGGA ATTGGAGCCC GTGACGGTGG GCGGCGTCAC CGTCAGAAGG
GCGACTCTGC ACAATCAGGA TGAGGTGGAG CGCAAAGACA TTCGTGTGCG CGACCAGGTG
ATGGTGCGCC GCGCGGGGGA CGTGATTCCG GAGGTCGTCG AGGTCATCGG GGAAGCCAGG
ACGGGTGGTG AGGAGGTTTT CCAGATGCCC GGGCAGTGCC CTTCCTGCGG GTCGGAGGTC
GTGCGCCTGC CGGAAGAAGC GGTCCATCGC TGTCTGAATC GCAACTGTCC GGCTCAAATC
AAGGCGTCCC TGCGTCATTT TGCGAGCCGG GACGCAATGA ATATCGAAGG TCTGGGCAAG
AACATCGTTT CGATGCTTGT GGACCGGGGC ATCGTTGAAT CGGTGTCGGA CCTCTACCGG
CTGAGCGTCG AGACACTGGA GCAGCTCCCG GGGTTTGCCG GAAAGTCGTC CCGCAACCTG
GTCGAATCGA TCGAGAGAAG CAAGAAGACC AACCTGGCGG ATTTCCTCTA CGCGCTCGGC
ATCTATCACG TGGGGAGCCA CGTTGCCCGG TTGCTGGCGG AGCGATTCGG GACGCTCGAT
GCCGTACGCC GGGCTTCCGT GGAGGAGCTG ATGAGCGTCA ACGGCGTCGG AGAGGTGGTG
GCCAGGAGCG TGGTCCATTA TTTCTCGCTT CCCGCCAATC GGACGCTGGT CGAAAGCCTG
CTGAGCGCGG GACTCGAGAT GGCGGCCACC GAGCCTGAAG CCGGGCCGGT GGATGCATTC
TGGAACGGGA AGACGGTTGT TTTCACCGGC GCGCTCAGCT CGATGACCCG ATCGAATGCG
GCGGCCCTGA CGGCATCGAG GGGGGCCAGG GTGTCCGACA GTGTGAGCAG GAAGACGGAC
ATCGTCGTGG CCGGTGCCGA TCCGGGATCG AAGGTCGAAA AGGCAAGACA GTTAGGGATT
ACGATCCTGG ATGAAAGGGA ATTTCTCGAG CGACTCGGGA TGTAA
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| Protein sequence | MPAVLSYSFY DFLVEGVRAM PDREKAHARI EALREEIRHH NYLYYVLDRP EISDEAYDGL
FRELVRLEES YPALITPDSP TQRVGAAPAE KFLPFPHTIP MLSLENAMSE AEVFEFARRV
RKILGDRGDV DFMAEPKMDG LAVELVYENG ELTGAGTRGD GYVGEDVTRN AKTIRAIPLK
LYAGAGGASP PARIAVRGEV YMDRKDFAAL NRSREQAGEP LFANPRNAAA GSLRQLDPSV
TAARSLKAFF YGVGEVSGYR FKTQAQTLEQ LRRWGLPVNP LSRVCPSIED AVSFYNEIAA
GRDALPFEID GVVVKVNSIE WQEMLGEKSR SPRWAIAYKF SPHQARTRVL DIKVQVGRTG
VLTPVAELEP VTVGGVTVRR ATLHNQDEVE RKDIRVRDQV MVRRAGDVIP EVVEVIGEAR
TGGEEVFQMP GQCPSCGSEV VRLPEEAVHR CLNRNCPAQI KASLRHFASR DAMNIEGLGK
NIVSMLVDRG IVESVSDLYR LSVETLEQLP GFAGKSSRNL VESIERSKKT NLADFLYALG
IYHVGSHVAR LLAERFGTLD AVRRASVEEL MSVNGVGEVV ARSVVHYFSL PANRTLVESL
LSAGLEMAAT EPEAGPVDAF WNGKTVVFTG ALSSMTRSNA AALTASRGAR VSDSVSRKTD
IVVAGADPGS KVEKARQLGI TILDEREFLE RLGM
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