| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1418 |
|---|
| Symbol | |
|---|
| ID | 4461354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1759652 |
|---|
| End bp | 1761592 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639702186 |
|---|
| Product | deoxyxylulose-5-phosphate synthase |
|---|
| Protein accession | YP_845544 |
|---|
| Protein GI | 116748857 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.793105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.333041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACAGAAC TTCAAACGAG CACTTTGCTC TCTCAGATTG ACAGGCCGAG CCAGCTGAGG
CAGCTCACAC CTGCTCAGCT CCAGCAGCTC GCCCAGGAAA TTCGCGAGAC TCTGATCCAA
ACCGTTTCCA GGAACGGCGG TCACCTCGCT CCCAATCTCG GGGTCGTTGA GCTCACTATT
GCCCTGCATT ACGTGTTCGA CTCCGCTTGC GACCGCATCA TCTGGGATGT CGGGCATCAG
GCCTATGCAC ACAAGCTGGT CACCGGGCGG CGCGCTCAAT TCCACACGCT TCGCCAGTAT
GGCGGCATCA GCGGCTTTCC CAAGCGGTCC GAAAGCAAGT ACGACGCCTT CGGCACGGGA
CATTCCGGCA CCTCGATTTC GGCGGCGCTC GGGATGACCG CTGCTCACTC GTTGAAAGAC
AGCCCGTGCC GGGCCATCGC CGTGATCGGA GACGGGAGCA TGACCGGGGG AATGGCGTTC
GAGGCCCTCA ATCATGCCGG CGACCTGGCC AAGAACCTGA TCGTCGTCCT GAACGATAAC
GAGATGTCCA TCTCCCCGAA CGTGGGAGCG CTTTCCGCTT TCCTGAGCAG AAAGCTTTCG
ACCAAGAGCC TCATGAACCT CAAGAAGGAG ATGGAGCGAT TCGTCAGGAC AATTCCCGGC
CTGGGCACCA ACATCATCCA AATCGTCAAG CGCAGCATGG ATTCGCTCGT CACTTTCTTC
ACCCCGGGCA TGCTGTTCCA GGCGCTTGAT TTTCATTACA TCGGCCCCAT CAAAGGGCAT
CGACTGGACC GGCTGATCGA GACACTCCGG ACGGCACGCG AAATCGAGGG GCCGGTGCTG
ATCCATGTCA TGACCGAGAA GGGCCGGGGT TATCCTCCGG CGGAGATCGA CCCGACCAGC
TTCCACGGCG TGGGCGCTTT CGACATCGCC ACGGGCAAGA GCCTGAAATC GGAGCTGAAA
AGCCCGCCGT CCTACACGAA GGTGTTCGGC GACACGATCT CCCGTCTTGC CTACGACGAT
TTCAAGGTGG TCGCCATCAC CGCCGCGATG CTCCAGGGAA CGGGCCTTGA ATGCTATTCG
GAACGGTTCC CCGATCGATT CTTCGATGTG GGGATCGCGG AACAGCATGC CGTGACGTTT
GCCGCCGGCA TGGCCGCGGA AGGCTTCAAA CCGGTGGTCG CCGTCTATTC CACTTTCCTT
CAGCGCGCCT TCGATCAAAT CGTCCACGAC GTCTGCCTTC AGAACCTTCC CGTGGTCTTC
GCGATGGACC GCGGAGGCCT TGTGGGCGAG GACGGACCGA CTCACCACGG GGTTTTCGAT
CTGTCTTTCC TGAGGATCAT TCCCAACATG ATCCTCATGG CCCCCAAGGA TGAGAATGAG
CTGCAGCACA TGTTGAAGAC GGCTCTCGAT CACCATGGAC CGGCAGCCGT TCGATATCCC
CGCGGGAACG GCTACGGCGT CGCGATGGAC AAGAACCCCG AAACGCTGCC CGTCGGCAAG
GGAGAGCTTC TTCGCGAGGG AGAGGACATT CTGCTGATCG GGATCGGTAC GACCGTATAC
CCCGCCATGG AAGCGGCGCA GCGACTGGAG CGTCAGGGAA TCAGCGCGGC CGTGATCAAC
GCGCGGTTCG TCAAACCCCT GGACCAGGAC CTTATTTTCG ATTGGGCCAG GAAGATCGGG
AAGATCGTGA CCATCGAAGA AAACGTGCTC CAGGGAGGGT TCGGCAGCGC CGTACTGGAA
ATGTTGCAGG AGATTTCATT CTCCCCGAAG TCTTTCGTGC GCCTGGGAAT TCCCGACACG
TTCGTGGTCC ATGGCCCGCA GAGCACGCTT CGAAACCTTT ATGGAATCGA TGCGGACGGT
ATAGAAAACG CCGCATTGAA CCTGCTGAAC ACGCGCGATG GCCAAATCCT CCACGCGATT
GGACAAGTTG CTCGTCGATA G
|
|---|
| Protein sequence | MTELQTSTLL SQIDRPSQLR QLTPAQLQQL AQEIRETLIQ TVSRNGGHLA PNLGVVELTI
ALHYVFDSAC DRIIWDVGHQ AYAHKLVTGR RAQFHTLRQY GGISGFPKRS ESKYDAFGTG
HSGTSISAAL GMTAAHSLKD SPCRAIAVIG DGSMTGGMAF EALNHAGDLA KNLIVVLNDN
EMSISPNVGA LSAFLSRKLS TKSLMNLKKE MERFVRTIPG LGTNIIQIVK RSMDSLVTFF
TPGMLFQALD FHYIGPIKGH RLDRLIETLR TAREIEGPVL IHVMTEKGRG YPPAEIDPTS
FHGVGAFDIA TGKSLKSELK SPPSYTKVFG DTISRLAYDD FKVVAITAAM LQGTGLECYS
ERFPDRFFDV GIAEQHAVTF AAGMAAEGFK PVVAVYSTFL QRAFDQIVHD VCLQNLPVVF
AMDRGGLVGE DGPTHHGVFD LSFLRIIPNM ILMAPKDENE LQHMLKTALD HHGPAAVRYP
RGNGYGVAMD KNPETLPVGK GELLREGEDI LLIGIGTTVY PAMEAAQRLE RQGISAAVIN
ARFVKPLDQD LIFDWARKIG KIVTIEENVL QGGFGSAVLE MLQEISFSPK SFVRLGIPDT
FVVHGPQSTL RNLYGIDADG IENAALNLLN TRDGQILHAI GQVARR
|
|---|
| |