Gene Sfum_1337 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1337 
Symbol 
ID4460368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1657437 
End bp1659905 
Gene Length2469 bp 
Protein Length822 aa 
Translation table11 
GC content60% 
IMG OID639702105 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_845463 
Protein GI116748776 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.121372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGCGGC TCCGCCACGA CACCGAGAAG CGGGCCGATG CCCTCAGCTA CTTTTATTCC 
GAGCGCAAGA ACGACATGCG GGACATCCGC GAAAGCCGGG CGATTTCCGT TTTCTTCCAG
AACCGGGCGC TCGGGATGTC CATGAAATAC GGCCTTGAAG CCAGCCTGCT CGGAATCCTG
GAAGAGCTCG AGCGGGTGCA AAGAGACCGG GCGCTCGGGA AAGACCCCAT CTACACGAGG
ATCGTCTTCC TGGACGATCA GGGCACGGTG CTGGTGGACA CCAGGCCCTC ACCCGAAGCG
GATTCGGCGG GTGCCTGGCA GAGGTTTCTC GCCCCCGGAT CGTCCGACGC CCTCATTCTT
AGCGAGATCA AGGATGACGC CCGGCAGGTG CTGATATCCG CCCCCTATTT CTTCAAGGGG
AAATATTCCG GCCAGATCGT CGCCGAGGTG TCGACCCAGG CCGTCCAGAC GCACCTCATC
AAGGCTGTCG GGGGCTATTC CAAGCGTGCC GTTTCAGTGA TCACGGGCGA GTGCAGCCGT
CCCCCGACGG CCGTTCCCGA CCCCGATTTC GTAACCGCGC GGCTTTCCGA CCTCAAGTCG
CTCCAGGATG CCGATTCGCC GGCGTTCGAC GAATTCTCCC GGGAAGAGCT GCACGAGGAA
TTCGTGATCA ACTGCGTCGA GGTCAAGAAC ACTCCCTTTT ACCTGGTCAA CATCTCTCCG
GTTTCCGAGC TTTTCGGCAC GGCCGCGCCG TGGCAGTTGC TCCTGGCCAT GGGGGCCTTG
TCGATCCTGG TCCTGGGCGG AACAGCCGTC GCATGGCACA TCAACGGCCG CAATCTTGTC
CTGCAGACGG GTCTGAAAGA GGCCGCCAGG AACAGGCTGG AGCTCGAAGG AAAGAACTTT
CAACTCGAAA GGGAAATCGC CGAGCGCAAG AAAGTGGAGG ATGCGCTGCG CGAGTCCGAG
GAGAAGTACC GGCTCGTTGT GGAAAACGCC AACGAAGCCA TCTTCATCAC CCAGGACGGA
GTCATCAAAT TCCCCAATCC CAAGACCCTC TCGCTCACCG GATTCACCAC GGACGAGCTG
ACCTCGGCCA ACCTCGCGGA GCTCCTTCAC AGCGAAGACC GGCAGACCGT CCTGCAGGAA
CACGCCAACA CGCTGGAATC AAACTCGACC AGCCGATACG CCTTCAGAGC GTTCAGAAAG
AACGGCGAGG AACTGTGGCT CGAAGCCAAC TCGGTGCCCA GCACCTGGGA GGAAAGACCG
GCCATCCTCA ACTTCATCCG GGACATCACT CTTCAGAAGA AGCTCCAGGC CCAGCTGTTC
CACGCTCACA AGATGGAAGC CATCGGCACG CTGGCCGGAG GGATCGCTCA TGATTTCAAC
AACCTGTTGC AGGTGATACA AGGCTATGCG GAAATGCTGT TGTTTGGAAA GGAGCAGGAC
GATCCGTTCC AGAAGGAGCT CGAGGAGATC TTTTTCGCCG CCAAGCGCGG TGGCGAGCTC
ACCCGGCAGT TGCTGACCTT CAGCCGGAGA ATCGAAAGCA AGCCCCGCCC CATTCATCTG
AACCGTCAAA TCGTGGAAAC CAGGAAGCTC CTGGAACGGA CCATCCCGAA GATGATCACC
ATCGAGCTGA ACCTGGCGAC CGATCTGCGC CCCGTCAATG CCGATCCCGC GCAGTTCGAA
CAGGTTCTGA TGAACCTGGC CGTCAACGCC CGGGACGCCA TGCCGGAGGG AGGGGTTCTC
ACCATCGAGA CCAGGAACGT CGTGCTCGAC GAGCTGTTCT GCATGGGACA AGTGGGAGTG
AGTCCCGGCG AATACGTGAT GCTCAGCGTA TCCGATAACG GTCACGGGAT CGACGCCGGG
ACCCTGGAGC ATATCTTCGA GCCCTTTTAC AGCACCAAAG GGGTAGGCAG GGGAACGGGG
CTCGGGCTGG CGATGGTCTA CGGGATCGTC CAGAGCCATG CGGGGTGCAT CCTGTGCTTC
AGCGAAGCCG GGAAAGGCAC CCGATTCGAC ATCTACCTGC CCCCGACCAA CGCGGCCGTG
CGCCCCGAGG AGAAGCGCTC GCCCCAGGAA TTGCGGGGCG GCACCGAAAC CGTGCTGCTG
ATCGAGGACG AAGCCTCCAT CAGGAATATC TGCAAGCAAA TGCTCGAACA ATTCGGCTAC
CGCGTCATGA TCGCCGTCGA CGGCGACAGC GGGCTGCGCG CCTTCAGGGA GCATTGGAAA
GACATGGACG TCGTTCTCCT CGACTTGATC ATGCCCGGCA TGGGCGGAAA GGAATGCCTC
AAGGAGTTGC TCAAGGTCAA CCCGGATGTT CCGGTCATTA TCGCCAGCGG ATATTCGCCG
GACGGCCAGA CGATCCAGAT GCTCGAAAAC GGGGCACGCG GATTCGTCCA CAAGCCCTAT
GAAATCCGGG AGCTGCTGAG GGTGATCCAG GGAGTGATGG CGGCCCCCAA AGGCATGGAG
GACGAATAG
 
Protein sequence
MERLRHDTEK RADALSYFYS ERKNDMRDIR ESRAISVFFQ NRALGMSMKY GLEASLLGIL 
EELERVQRDR ALGKDPIYTR IVFLDDQGTV LVDTRPSPEA DSAGAWQRFL APGSSDALIL
SEIKDDARQV LISAPYFFKG KYSGQIVAEV STQAVQTHLI KAVGGYSKRA VSVITGECSR
PPTAVPDPDF VTARLSDLKS LQDADSPAFD EFSREELHEE FVINCVEVKN TPFYLVNISP
VSELFGTAAP WQLLLAMGAL SILVLGGTAV AWHINGRNLV LQTGLKEAAR NRLELEGKNF
QLEREIAERK KVEDALRESE EKYRLVVENA NEAIFITQDG VIKFPNPKTL SLTGFTTDEL
TSANLAELLH SEDRQTVLQE HANTLESNST SRYAFRAFRK NGEELWLEAN SVPSTWEERP
AILNFIRDIT LQKKLQAQLF HAHKMEAIGT LAGGIAHDFN NLLQVIQGYA EMLLFGKEQD
DPFQKELEEI FFAAKRGGEL TRQLLTFSRR IESKPRPIHL NRQIVETRKL LERTIPKMIT
IELNLATDLR PVNADPAQFE QVLMNLAVNA RDAMPEGGVL TIETRNVVLD ELFCMGQVGV
SPGEYVMLSV SDNGHGIDAG TLEHIFEPFY STKGVGRGTG LGLAMVYGIV QSHAGCILCF
SEAGKGTRFD IYLPPTNAAV RPEEKRSPQE LRGGTETVLL IEDEASIRNI CKQMLEQFGY
RVMIAVDGDS GLRAFREHWK DMDVVLLDLI MPGMGGKECL KELLKVNPDV PVIIASGYSP
DGQTIQMLEN GARGFVHKPY EIRELLRVIQ GVMAAPKGME DE