Gene Sfum_1232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1232 
Symbol 
ID4461003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1525382 
End bp1526302 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content64% 
IMG OID639702000 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_845359 
Protein GI116748672 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGAAA AGGAGCCGAG CGGGCTCCTG GTTCTCGACA AGCCTGAAGG AATGACGTCC 
TCGACCCTCG TCACCAGGGT CAAGAGGCTG TTAGGCCTTC GCAAGGCAGG CCACTGCGGA
ACGCTGGACC CTTTCGCCAC GGGTGTGCTC CTTGTATGCG TGAACCAGGC CACTCGATTC
GCCGAGCAGC TGACCGGCCA GACCAAAGTC TACCGTTTCA CCGCGCGCTT GGGCATCGAA
ACGGATACGC TCGACAGGAC CGGCACGGTG GTGCGCACCC GCGATGACGT GGTCCCGTCC
GAACGGGAAC TGCTGGAGGC GGTGCGCTTG CACGAGGGGA CACAGGTGCA GGAGGTTCCT
CGGTACGCGG CCGTGAAGGT TCAGGGAAAA CGGCTGTACG AGCTGGCGAG AAAGGGAATC
GATGTCGAGC TGCCCAGGCG GGAAGTGCAT ATCCATCGCT TCGACTTGAT TTCCTACCGT
TACCCCGAGG TTGTTCTGGA AACGAAGTGC TCGAAGGGCA CGTACGTTCG TCAGTTGGCG
GCGGATTTGG GGAGGCGCCT GGGATGCGGG GCTCACGTCA TGCATCTGCG GCGGCTCGCG
TGCGGCCCCT TCGGCCTGGA GCGGGCAAGC TCGCTGGAGC AGATGCACGA CGGGGCTTCG
GACGGCTCCT GGTTGGCGAA GCTCGTTCCC ATGGCCGACG CGCTTTCGCA CCTGCCCGCG
CTGACGATCG AGGACGGGCA GGTTCTCAGT CGCTTGCGGT ACGGACAGCT TGACGCAGAC
TGGGAGGCGG AACACTCCGG ACGGTTTTCC CGGCGCGTGG GACCGGTGCG TATCGTCACC
GCCGACGGAC GCCTGGCGGC ACTCTGGTGG CCGTGGCCGG AATCGGAGCA CCAACGCCGT
TTACGCGTGT TTCAACTTTG A
 
Protein sequence
MREKEPSGLL VLDKPEGMTS STLVTRVKRL LGLRKAGHCG TLDPFATGVL LVCVNQATRF 
AEQLTGQTKV YRFTARLGIE TDTLDRTGTV VRTRDDVVPS ERELLEAVRL HEGTQVQEVP
RYAAVKVQGK RLYELARKGI DVELPRREVH IHRFDLISYR YPEVVLETKC SKGTYVRQLA
ADLGRRLGCG AHVMHLRRLA CGPFGLERAS SLEQMHDGAS DGSWLAKLVP MADALSHLPA
LTIEDGQVLS RLRYGQLDAD WEAEHSGRFS RRVGPVRIVT ADGRLAALWW PWPESEHQRR
LRVFQL