| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1212 |
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| Symbol | |
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| ID | 4460637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1497693 |
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| End bp | 1499492 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639701979 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_845339 |
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| Protein GI | 116748652 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.389301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGACA AGGAAACAAA GCAACGACGC GATCCCGCTT TGAGCAAGCC GGAGATGGAC
GATATCAAGC GTCTCATTAC GGTGGGCAAG GAAAAGGGCT ATCTCACGTA CGATGAAGTC
AATGAGGCCT TGCCCGAAGA TCTGGTCTCT CCTGAGAAAC TGGACGACAT GATGATGATT
TTTGATGAGA TGGACATCGA GATAGTCGAT TCGGAGCAGC AGGTCCAGGT GGTTCGGGAG
ACCTCGGGCG CGGATTCCGA CTCCCTGCTG GAGGAAGAAG AAGATGAGCT GCAAATAGAG
GCCGACGTCA CGAGCCGTGT CACCGATCCG GTAAAAATGT ATCTGCGTGA AATGGGACAG
GTTTCGTTGC TCACACGCGA GGGAGAGGTT GAAATCGCGA AACGCATCGA AGCAGGAGAG
CGGGAAATCT TCAACGCGAT CATGGAATCT TCCATCGGCA TCAAGGAAAT CATGAACCTC
AAGCACAAGC TCGAGGACGA CAACGCCAGG GTCAGCGATG TTCTCCGGGA GGTGGACGAC
GAAATCACGG TGGAGGAGGA GACGGCCCAG AAAGAGCGGG TCGTCGGCAT ACTCCGTGAA
GTCCAGAGTC TTGATGAGTC GAACAAGATA TTGCAGACCA GACTTTTGAG CGACAGCCTC
ACAAGGGATG AGGAGTTCGT GCTGAAGAGC CAGGTGCAGC AGAACAAGGA GCAGATCGTG
AGCCTCCTCA AGGGGCTTCA GCTCAGCAAG CGCCATATCG ACAGCATCAT CGACAAGTTG
CACTTGTGCC TCGACGTCAT CGAGCGGTCC GAAGACGAGT TGAGGAACTG TCTGCTGCTG
TCCGGTAAGC CTTTGCAGGA ATTGAAGCCG CTTTATGAGA CGGCGATCGA GGACAGGGGG
AAGGCTCGGG CCTGTGCCGA TCAGGTCAAC ATGGAGGAGA AGGATTTCCT GGAATTGGCC
AACAAGGCCA TCGAGGCGAA GCAACGGATC GAAGAACTGG AAATCGAGGC GAAGATGGAT
TCCCGGTCTC TGCGCCTGAT CCTCAGGCGG GTGGAGGATG GGCTGATCCG GGCCAAGCTG
GCGAAAAGCG AGCTGATCGA GGCGAATCTG CGCCTGGTGG TGAGCATCGC CAAGAAGTAC
ACGAACCGGG GACTCCAATT CCTTGATCTC ATCCAGGAGG GCAACATCGG ATTGATGAAG
GCCGTGGACA AGTTCGAATA CCAGCGTGGC TACAAATTCA GCACGTATGC CACGTGGTGG
ATACGCCAGG CGATCACCCG CGCCATTGCC GACCAGGCCC GGACCATCAG AATTCCCGTT
CACATGATCG AAACCATCAA CAAGCTGATT CGCACTTCTC GCTATCTCGT CCAGGAGTTG
GGACGGGAGC CGACTCCCGA GGAGATCGCC GAAAAGATGG AATTTCCCGT CGAGAAAGTG
CGCAAGGTAT TGAAGATCGC CAAGGAACCC ATCAGCCTGG AAACGCCGAT CGGTGAGGAG
GAGGACAGCC ATCTGGGCGA TTTCATCGAA GACAAGCGTG TGGCATCGCC CGTGGATGCG
GTGATCAACC TCAACCTGAG CGAGCAGACG CGCAAAGCCC TTGCAACGCT GACGCCGCGC
GAGGAGAAAG TGCTGCGGAT GCGCTTCGGC ATCGGCGAAA AGGCGGATCA CACCCTCGAG
GAAGTGGGGC AGGATTTTGC CGTGACGCGG GAGCGCATCC GGCAGATCGA AGCAAAGGCA
CTGCGGAAGC TCCGGCATCC GAGCCGCAGG AAGGAGTTGA AGAGCTTCAT CGAAACATGA
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| Protein sequence | MTDKETKQRR DPALSKPEMD DIKRLITVGK EKGYLTYDEV NEALPEDLVS PEKLDDMMMI
FDEMDIEIVD SEQQVQVVRE TSGADSDSLL EEEEDELQIE ADVTSRVTDP VKMYLREMGQ
VSLLTREGEV EIAKRIEAGE REIFNAIMES SIGIKEIMNL KHKLEDDNAR VSDVLREVDD
EITVEEETAQ KERVVGILRE VQSLDESNKI LQTRLLSDSL TRDEEFVLKS QVQQNKEQIV
SLLKGLQLSK RHIDSIIDKL HLCLDVIERS EDELRNCLLL SGKPLQELKP LYETAIEDRG
KARACADQVN MEEKDFLELA NKAIEAKQRI EELEIEAKMD SRSLRLILRR VEDGLIRAKL
AKSELIEANL RLVVSIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYQRG YKFSTYATWW
IRQAITRAIA DQARTIRIPV HMIETINKLI RTSRYLVQEL GREPTPEEIA EKMEFPVEKV
RKVLKIAKEP ISLETPIGEE EDSHLGDFIE DKRVASPVDA VINLNLSEQT RKALATLTPR
EEKVLRMRFG IGEKADHTLE EVGQDFAVTR ERIRQIEAKA LRKLRHPSRR KELKSFIET
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