| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1160 |
|---|
| Symbol | |
|---|
| ID | 4460238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1437797 |
|---|
| End bp | 1439224 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639701927 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_845288 |
|---|
| Protein GI | 116748601 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAACG CGGGCGAAAC GGACAAGACG ATTCGTGAGC GGGCCGACAA ATTCCAGAGC
ATCTTCGAAA ACTCGACCAT GGGGATTTTT CAGTCGAGCC TGGACGGTCG ATTCCTCGCG
GTCAACCCGG CTTTCGCCAA AATCTTCGGT TATGCATCGC CCGAGGATCT CATAGAATCG
ATACAGAGCA TTGATTCCCA GTTCTACAGG CGCTCGGAGC AGAGAGGGAA GATTCTGTCG
GCCATCGAGA ACAAGACCGG GATGGCGAGG TTCGAGGCGG AATTCCTCCG TAAAGAGGGG
ACCGTCATCA CCTGTTCGCT GAGCATCCGT GCCATTCGTG ACGGCAGCGG CGCCATCACT
CACCTCGACG GCTTCATCGA GGACGTTACG GAAGCGACGC TCCGGAAGAA GGAGATTCAG
GAGCGGACCG AACACCTCAG CAGGGAAAAC CTCCGCCTGC GCAACATGTT CAAAGACCGA
TACCGGTTGG GGAAGATCGT CGGCAAGAGC GCGGCCATGC AGGAAGTCTT CGAAGGCATA
CTGCAGGCAG CCGGCACCGA AGTCGCCGTC ATGATCCACG GCGAATCGGG AACGGGAAAG
GAACTGGTCG CGAACGCCAT CCACGATCTC AGCCGCCGCA GGAGCCGCCG CTTTGTTCCG
GTAAATTGCG GCGCCATTCC CCTGCACCTG CTTGAAAGCG AGTTCTTCGG CCACAGGAAA
GGCGCCTATA CGGGGGCTGT TTCAGACACA AGGGGGTTTC TGGAACGAGC CGACGGAGGG
ACGTTGTTTC TTGACGAAGT GGGGGAACTG AGCCTCGATA TGCAGGTGAA ACTGCTGCGG
GCCCTCGAGG GCGGCCACTA CTTTCCCCTC GGTGAGAGCA GGCCGGCGGA ATCCGATTTT
CGGCTGATAT CGGCCACCAA CCGCAATCTG AAGGATATGG TGAGGGATGG GAGAATGCGC
GAGGATTTCT TTTTTCGGAT CGACATCGTT CCCATCGATC TGCCACCCCT CCGGCAACGT
CGCGAAGACA TTCCGCTCCT GATCGATCAT TTTCTGCGCC ATTTCACGGG GGCCGAGAAT
CCTCCCGTTC TTCCGGGTAA AGTCCTGGAG GCTCTTTATA AATATGATTA CCCCGGCAAC
ATTCGCGAGC TGCAGAACAT TCTGCAGCGT TATCTGGCGA CGAAACGGCT GGGCCTGCTG
GGCTCCATGG AGCATGAAAG GGCGGCGGAG ATCTCCGGGC AGATGGAAGA AGCGGAGGTT
TCCCTGCACG ATGAAGTCTC GCGCTTCGAA AAAAGCGTCA TCGAAAAAAA TCTTGTTCGT
CATCGGTGGA ACCGGATTCG AACTGCGGCT GCATTGAAAA TCGACCGCAA GACCTTGTAT
ACCAAAATGA AAACCTATGG GTTGCTTTCT CCCGGTCGTG GGGAGTAA
|
|---|
| Protein sequence | MGNAGETDKT IRERADKFQS IFENSTMGIF QSSLDGRFLA VNPAFAKIFG YASPEDLIES
IQSIDSQFYR RSEQRGKILS AIENKTGMAR FEAEFLRKEG TVITCSLSIR AIRDGSGAIT
HLDGFIEDVT EATLRKKEIQ ERTEHLSREN LRLRNMFKDR YRLGKIVGKS AAMQEVFEGI
LQAAGTEVAV MIHGESGTGK ELVANAIHDL SRRRSRRFVP VNCGAIPLHL LESEFFGHRK
GAYTGAVSDT RGFLERADGG TLFLDEVGEL SLDMQVKLLR ALEGGHYFPL GESRPAESDF
RLISATNRNL KDMVRDGRMR EDFFFRIDIV PIDLPPLRQR REDIPLLIDH FLRHFTGAEN
PPVLPGKVLE ALYKYDYPGN IRELQNILQR YLATKRLGLL GSMEHERAAE ISGQMEEAEV
SLHDEVSRFE KSVIEKNLVR HRWNRIRTAA ALKIDRKTLY TKMKTYGLLS PGRGE
|
|---|
| |