Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_1120 |
Symbol | |
ID | 4457946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 1393783 |
End bp | 1396200 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639701887 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_845248 |
Protein GI | 116748561 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.37757 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCAGA AACCGAGCTA TGAAGAGCTG GCGGGCAGAG TCCGCGAGCT GGAAGAGGAT GCGCTCGCGC GCAGGCGAAC GAATGAAGTT TTGCGCAAGA GCGAAGAACG CTATCGGATG ATCTTCAACT ATTCCCCGCT GGGGATCGTC CATTTCGACT GCGACGGACT GATCGTGGAC TGCAACGAGC GTTTCCTCGA AATCGTGGGA GCTCCCAGGG AACGGCTCCT CGGATTCAAT ATGGCCACGT CCTTGCGCAA CGAGGAGATG AGAGCCGCGG TAATCGCCGG CCTCTCGGGA GAGCCCAACT ATTTCGAAGG GGATTATCGG TCCGTGACCG CAAACAAAGT AACCCCCATC AGGGCCATGT TCAGCCGAGT GAACACCGAC GACGGCGGAT TCATGGGAGC GGTGGGCCTC TTCGAGGATG TCTCCGCGCA GAAGCAGTCG GAGGAGGCCT TGCGGGAGTC CAGGGAATTT CTGGGAAAGA TCGTCGCTTC CATCAGCGAC CCCATATTCG TAAAGGACAG ATACCACCGG CTGATCCTGG TCAACGACGC CGAGTGCGCT CTTGCAGGCA GGACGCGCGA GGAAATCCTC GGCCGCACCG ACTACGATTT CTTCCCCAAG GAGCAGGTGG ACATCTTCTG GGAAAAGGAT GAAGCCGTTT TCGAAACCGG GGAGGAGAAC GAAAACGAGG AACAGATAAC GGATGGCCAG GGACGCACCC GCACGATCGT CACGAAAAAG AGCCTTTACA CGGACAGCTT CGGCAATAAA TTCATCGTGG GCGTGATACG AGACATAACC GACCGAAAAG AAGCCGAGCT CGCGCTCCAG GCGGCCCACC AGGAACTTCA GGACATCATT GAATTCCTGC CCGACGCAAC CCTGGTCATC GGCCGGGACA AAAAGGTGAC GTACTGGAAC CACGCCATCG AAGAAATGAC CGGGGTCCGG AAGAGCGACA TCCTGGGGAA AGGTGACTAC GCATATGCCA AAGCGTTTTA TGGTAACGGG AGACCCATGC TCATCGATCT CGTGATGGCC GAGGAACCTG AAATCGAAAG CAGGTATGAT TTCGTGAAGC GGATCGGCAC GACGGTTTAC GGCGAGGCTT ACGTCCCCGG GGCCTACCGG GGCAAAGGGG CTTACCTCTG GTCCACGGCG GCTCCGCTCA TCGGCAGGGA CGGGAACATC ATCGGTTTTA TCCAGTCCAT TCGGGATATT TCGGACCGCA AACGCGCCGA GGAGGCACTC AAAGAGAACG AGAAGAAATA CCGGCAGCTT TTCGAAACGG TGTCGGACGC CATTCTCGTC TGCGACGGGG ACAGCCGCCG GTTGATCGAC GTCAACGAGA GGGCCCTGAG CCTCTACGGC TACTCGCGTG AGGAATTTCT CGATCTGAGT TACCGCGACA TCACGGCGGA ACCCGACGAG TCGGATGTCG TTATCAAGGA GACGCTCTCC GGGGTGGGGA TACAAGTTCC GCTCCGCACG CACAGAAAAA AGGACGGGAC GGTTTTCCCG GCGGAGATCT CGTCGAGCAC GTTTGAGCTG GCAGGCCGAA AAGTCATATG CGGAGTGGTC AGGGACATCA CCGAGCGAAA ACGCGTGGAA CGGGAGCTTA GTGCATATCG AGACGGCCTC GAGCACCTGA TTGAAGCGCG CACCGCCGAA CTGGCAAGGG CAAACGAGCG GCTCAAGGTC GAAATAGAGG AGCGCAGGCG GGCGAAGGAG CGGTTGAAGC TTTTCGCCTA CTCGGTTGCG CACGACCTCA AGAGCCCCGC CGTGGGAATC CACGGCATCG CGAAGCGCCT CCACAGGCAG ACGCGGGATG TCCTCGATGA AAAGAGCAGG AGTTACTGCA GCCAAATCCT CAAAGTGTCC GAGCACATCG CCGAGCTTGT GGACAAGATC AACGTCTACA TCGCAACGAA AGAGGCGCGG CTATCGTTTG AAAGGATTGC CCTCAAGGAG ATTTTCGCCA TGCTCCGGGA CGAGTTTTCG GTGCAGTTCA ATAACCGTCG GATCGATTGG GAGCTGCCCG AGTCCGACGT GGTGGTCACG GCTGACAGGC TCTCCCTGTT GAGGGTATTC AGGAACCTCG TCGACAACGC GCTCAAGTAC GGCGGCGAGC ACCTGAGCAG AATCCGAATC GGGTACGAGG AAGGCAAAGA CTGTCACATT CTGTCCGTTG CCGACGACGG CAGGGGGCTC AGGGGGGCCG ATTCGGAGAG AATTTTCGAG GTGTTTCAAC GGCAGGAGAC CTCCAAGGGG GTCGAAGGCG CAGGCCTGGG CCTGACCATA GTCAGGGAAA TCGCCGAGCA GCACAATGGA AGAGTCTGGA TGGAGCCGGT CCCCAACGGC GGAGCCTCGT TTTTTGTAAC GATTTCCAAG GATCTGCCCG TTTCCTGA
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Protein sequence | MSQKPSYEEL AGRVRELEED ALARRRTNEV LRKSEERYRM IFNYSPLGIV HFDCDGLIVD CNERFLEIVG APRERLLGFN MATSLRNEEM RAAVIAGLSG EPNYFEGDYR SVTANKVTPI RAMFSRVNTD DGGFMGAVGL FEDVSAQKQS EEALRESREF LGKIVASISD PIFVKDRYHR LILVNDAECA LAGRTREEIL GRTDYDFFPK EQVDIFWEKD EAVFETGEEN ENEEQITDGQ GRTRTIVTKK SLYTDSFGNK FIVGVIRDIT DRKEAELALQ AAHQELQDII EFLPDATLVI GRDKKVTYWN HAIEEMTGVR KSDILGKGDY AYAKAFYGNG RPMLIDLVMA EEPEIESRYD FVKRIGTTVY GEAYVPGAYR GKGAYLWSTA APLIGRDGNI IGFIQSIRDI SDRKRAEEAL KENEKKYRQL FETVSDAILV CDGDSRRLID VNERALSLYG YSREEFLDLS YRDITAEPDE SDVVIKETLS GVGIQVPLRT HRKKDGTVFP AEISSSTFEL AGRKVICGVV RDITERKRVE RELSAYRDGL EHLIEARTAE LARANERLKV EIEERRRAKE RLKLFAYSVA HDLKSPAVGI HGIAKRLHRQ TRDVLDEKSR SYCSQILKVS EHIAELVDKI NVYIATKEAR LSFERIALKE IFAMLRDEFS VQFNNRRIDW ELPESDVVVT ADRLSLLRVF RNLVDNALKY GGEHLSRIRI GYEEGKDCHI LSVADDGRGL RGADSERIFE VFQRQETSKG VEGAGLGLTI VREIAEQHNG RVWMEPVPNG GASFFVTISK DLPVS
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