| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1105 |
|---|
| Symbol | |
|---|
| ID | 4460544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1373491 |
|---|
| End bp | 1374303 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639701869 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_845233 |
|---|
| Protein GI | 116748546 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGATAC GATCGGTTCC GGTTTGCATG TTTCATCATG TCAACGCAAA CGCCGGTGAC
TTTCTCACGG TGAGCGTCCC GGTGTTTGCC GAGATGATGG GGAGGCTGCG CCGCGAGGGG
TATGCCACGC TGAGCAGCGA GGAGTTCCGC GACTACATGC TCGGTGTGAG GGACGTACCC
GCCAAATCGG TCCTGCTCAC CTTCGACGAT GCCTGGCTGG ATGTTTTCGT TTACGCATAC
CCGATTCTGC GAACATTCGG GCTCAAATTC ACCGTCTTCG TCGTTTCCGG CTGGGCCGAC
CTGGCGAGCA TGCATCCCCG ACAGGCTCCG CCCGAAGCGT TCCCCCCGCA CCGGGAAGCG
GAGGATCTTG TGCGCACGAA ACGGGCCGGG GAGGTCGTGT GCAACTGGCA CGATCTCAAG
GAGATGACCG ACGGCGGGCT TTGCTCGGTC GAAAACCACA CGGCGAGTCA TGGACGCCTG
CCGGATGTCC GGTCGGACAT CGCGGCGGGC CGGGAGGCAC TTCGGCGCCA CTTGGGAAGG
CCGGGAAATC AGCTCTGCTG GCCGTCCGGC AGGCATGACC GACATTCCCT CGCCACAGCC
CGCGCCCTGG GCATCGACGT CACCTATCTC GTGAGGCGCG GCGTGAACCT GGCGGGTTGG
GGAGCCATGC GGGTCAAGCG GTTCACCGTG GACGACCGGG ACGGGGACTG GCTCATGCGG
CAGATCGAGA TCTTCTCGAG ACCCGTCTAC GGGTATCTCT ATTCCCGGAT CAAGCCGGAT
CGGCTGATGC GGGAATGGTT CGGGAAGCGT TGA
|
|---|
| Protein sequence | MKIRSVPVCM FHHVNANAGD FLTVSVPVFA EMMGRLRREG YATLSSEEFR DYMLGVRDVP
AKSVLLTFDD AWLDVFVYAY PILRTFGLKF TVFVVSGWAD LASMHPRQAP PEAFPPHREA
EDLVRTKRAG EVVCNWHDLK EMTDGGLCSV ENHTASHGRL PDVRSDIAAG REALRRHLGR
PGNQLCWPSG RHDRHSLATA RALGIDVTYL VRRGVNLAGW GAMRVKRFTV DDRDGDWLMR
QIEIFSRPVY GYLYSRIKPD RLMREWFGKR
|
|---|
| |