| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1050 |
|---|
| Symbol | |
|---|
| ID | 4460658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1298973 |
|---|
| End bp | 1301192 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639701814 |
|---|
| Product | methyl-viologen-reducing hydrogenase, delta subunit |
|---|
| Protein accession | YP_845179 |
|---|
| Protein GI | 116748492 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1148] Heterodisulfide reductase, subunit A and related polyferredoxins
[COG1908] Coenzyme F420-reducing hydrogenase, delta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0896174 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA AGATGGGCGT GTACATATGC ACGGGGTGCG GCATCGGAGC GGCTCTGGAC
ATCGAGGCTC TGGCCAGGGT GGCAACCGAC GAATACAAGA TCGCGTCATG CGGGGAGCAC
CCTCACCTTT GCAGCCCCGA AGGCGTGGCG CTCGCCCGGT CCGGCCTGGA GTCCGAAGGG
ACGGGTTTCG TTGTGATTGC GGCCTGTTCT CCGCGCGTGA TGACCGACGT GTTCGACTTT
TCCCCCGGTG CCGTGGTGGA GAGGGTCAAC CTCCGGGAAC AGGTGGTGTG GTCCCATGCG
CCCAACGACG AAAACACGCA GATGATGGCC GAGGACGCCC TGCGCATGGG AATCGTCAAG
CTTTCCGAAA CCCAGCCTCC CGACCCTTTC ATCGGGGAGG AGCTCAGCAA GCGTATCCTG
GTTGTGGGCG GTGGCCTGAC CGGATTGACC GCGGCCAACG AGACCGCCAA AGCCGGGTAC
GAAGCCGTGT TGGTGGAAAA GGAAAAAGAG CTCGGAGGGT ACCTTCGAAG GGTCCACAAA
GTGCCTCCGT CCTCTCCGCC TTACGACACT CCGCATGACT CGCCGCTGGA TCAACTGATC
CGGGAAGTGA CGAGCCGGCC GAAGATAAAG GTCCATACGG GGGCTCAAAT TGCCTCGACG
TCGGGGGCGC CGTGCATGTT CGACGTCACG GTTCGCGGTG ACGGGTCCGA ATGGACGGAA
CGGGTCGGCG GGATCGTTTT GGCGACCGGT TCCGTGTCCT ACGATGCGGC AAAGCTTACC
CATCTCGGCC GCGGTCGGTT TCCGGACGTC GTCACGGCCG CCGAGCTCGA AGAGATGTTC
GTCTCCGGCA ACGTCGCGCG TCCCTCCAAC GGGGGGCGGG TCGGCAGCGT GGCCTTCATC
CTCTGCGCGG GTTCCCGCGA CCCGGAACAC CTGCCCTACT GTTCGTCGGC GTGTTGCGTG
GAATCCCTGA AGCTGGCGAG CTGCTTCAAA TCCATGAACC CGCAGATGCC GGTTTATATT
TTTTACCAGG ACATGCGCGC CAACGGGACG TATGAGTTGC TTTACAAACA GGCCCAGAAG
GACGGCACGA TTTTCATCCG GGGAGCCGTC CGCGATGTCG AGGACGATGG ATCGGGGGGG
CTTGTCATCG TTGCAGACGA TGAGCTGACG CGCTCCCCGA TCATGTCGGA GGGCGTCGAC
CTGGTGGTGT TGGCTGTGGG CATGGTTCCC ACGAGCGCCT TTGGAGACCC CTTCAAGGCC
CAGGCCGCCA AGGAAGGCGA GGAAGAATCG GCGGTTCCCG CCGACACCGT GCTGGTGTCG
AACCTGCTCA ATCTCCAGTA CCGCCAGGGT CCGGAGCTCC CGACGCTCAA CCACGGTTTC
CCCGATTCCC ATTTCATCTG TTTCCCGTAC GAATCACGCC GTACGGGAAT CTATCCGGCC
GGGACAGTGC GCGCGCCCAT GGACTACGCC GCAGCCGTGC AGGACGCCAC GGGCGCCGCC
CTCAAAGCGA TCCAGTGCGT CGAGATGGTT TCCGGCGGCA AAGCCGTCCA TCCCAGGGCC
GGGGACACCA GCTACCCGGA GTTCTTCATG CAGCGGTGCA CGCAGTGCAA GCGGTGCACG
GAAGAATGTC CCTTCGGCGC GATCAACGAG GATGAAAAAG CCAATCCGCT TCCGAACCCC
ACGCGGTGCC GCCGTTGCGG AGTCTGCATG GGCGCCTGCC CGGAACGGAT CATCTCGTTC
AGGAACTACT CCGTGACCAT GATCGGAAAC ATGATCAAGA ACATCCAGGT TCCCGACGAG
TACGAGGAAA AGCCCCGCAT CCTTGTCCTC GCGTGCGAAA ACGACGCCTG CCCGGCGCTG
GACATGACCG GTATCCGGCG CCTCGCTTAC AACCCGTGGG TCCGGGTGAT CCCGGTCCGA
TGTCTGGGTT CAACGAACCT CGTCTGGATT GCCGACGCCC TCTCCAAGGG AATCGACGGC
ATCCTGCTGC TCGGATGCAA ACACGGGGAC GATTACCAGT GCCATTTCAT CAAGGGAAGC
GAACTCGCCG ATATTCGCAT GAGCAAGATC CGGGAAACCC TCAATCGCCT TGTTCTGGAG
GCGGATCGAG TCCGCTTCGA ACAGATTGCG ATATCCGACT ACAGGCGTCT TCCGGAAGTC
CTCGACGGCT TCGCCGCGCG GATAGAAGAG CTTGGCCCGA ACCCCTACAA AGGTTATTGA
|
|---|
| Protein sequence | MEKKMGVYIC TGCGIGAALD IEALARVATD EYKIASCGEH PHLCSPEGVA LARSGLESEG
TGFVVIAACS PRVMTDVFDF SPGAVVERVN LREQVVWSHA PNDENTQMMA EDALRMGIVK
LSETQPPDPF IGEELSKRIL VVGGGLTGLT AANETAKAGY EAVLVEKEKE LGGYLRRVHK
VPPSSPPYDT PHDSPLDQLI REVTSRPKIK VHTGAQIAST SGAPCMFDVT VRGDGSEWTE
RVGGIVLATG SVSYDAAKLT HLGRGRFPDV VTAAELEEMF VSGNVARPSN GGRVGSVAFI
LCAGSRDPEH LPYCSSACCV ESLKLASCFK SMNPQMPVYI FYQDMRANGT YELLYKQAQK
DGTIFIRGAV RDVEDDGSGG LVIVADDELT RSPIMSEGVD LVVLAVGMVP TSAFGDPFKA
QAAKEGEEES AVPADTVLVS NLLNLQYRQG PELPTLNHGF PDSHFICFPY ESRRTGIYPA
GTVRAPMDYA AAVQDATGAA LKAIQCVEMV SGGKAVHPRA GDTSYPEFFM QRCTQCKRCT
EECPFGAINE DEKANPLPNP TRCRRCGVCM GACPERIISF RNYSVTMIGN MIKNIQVPDE
YEEKPRILVL ACENDACPAL DMTGIRRLAY NPWVRVIPVR CLGSTNLVWI ADALSKGIDG
ILLLGCKHGD DYQCHFIKGS ELADIRMSKI RETLNRLVLE ADRVRFEQIA ISDYRRLPEV
LDGFAARIEE LGPNPYKGY
|
|---|
| |