| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1030 |
|---|
| Symbol | |
|---|
| ID | 4460932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1270271 |
|---|
| End bp | 1271233 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639701793 |
|---|
| Product | general secretion pathway protein A |
|---|
| Protein accession | YP_845159 |
|---|
| Protein GI | 116748472 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00881191 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCACAGAC AATTTTACGG TTTTTCTGAA GAGCCTTTCA GCATAAAACC GGACACCGGT
TTTTGGTACC CGAGCCGCAA CCATCTGGAA GTGCTGACCA CCATCAGGGC TGGAATCAAG
AGTGGAAAGG GCATTCTCGT CATCACGGGA GAAGACGGGA TGGGGAAAAC GATTCTTCTC
CGGCTGCTGG TGGAGATGCT CGATCCCGGC GTGAAGGCCG CCCTCATAAG CGGGCCGTCG
CAAAGCTTTG AAGAGGTGCT CGAAGATCTC CTTCGCGCCC TTGAGCTTCC CCGGGGGGAA
CCGGACAAGA GCTCCATGCT GTCGCGGCTT TATGAATATT TGTATTCGGG GCTTTCAAGG
GGCAAAACCC TGCTGATCGC CGTGGATGAG GCCCACAAAT TCAGCGGGCA GGTGCTCGAG
GAGTTGCGCA TGCTCTGCAA CCCCCACCCG AGGAGGCCGG GACCGGGGAT TGTGCAGGAA
CTCTTTGCGG CCGGACCGCA GTTCGAGGAA AAGCTCCGGG CCGAGGATCT GATGCGGATC
CTTCAGAGAA TCGAGGTCCG ATGCCGGCTT GAGCCTTTGA GCGAGCTCGA AATCCCTCAA
TACGTCGAGC ACCGGCTGAG GAAGGTGGGG AGCGGCATTA CAAAGATTTT CACGCCCGAA
GCCGTCGATT TGATCTGCAG GTATAGCCGG GGGATTCCCC GGAACATCAA TATGCTCTGC
TACATGTCGA TCTGCAGCGG CTACGCCCTG TCCCGGAAGC ATATCAGCTC GGACCTCGTG
GAAAAGGCTC TCCCGGTTCT GAACGGGCAC AGATCGGGAA GATGGAAAGG AGTGAAGGGA
CCGGTCAAGG CCCTTGACGA CACCATCGAA AAAAGCCCGT TCATCACGAC CATCACTTAT
ATTCTGCTGG CATACTCGCT TCTGGCGCTG TTCATTGTCT TCCTGCTGAA CCTGCGCCTT
TGA
|
|---|
| Protein sequence | MHRQFYGFSE EPFSIKPDTG FWYPSRNHLE VLTTIRAGIK SGKGILVITG EDGMGKTILL
RLLVEMLDPG VKAALISGPS QSFEEVLEDL LRALELPRGE PDKSSMLSRL YEYLYSGLSR
GKTLLIAVDE AHKFSGQVLE ELRMLCNPHP RRPGPGIVQE LFAAGPQFEE KLRAEDLMRI
LQRIEVRCRL EPLSELEIPQ YVEHRLRKVG SGITKIFTPE AVDLICRYSR GIPRNINMLC
YMSICSGYAL SRKHISSDLV EKALPVLNGH RSGRWKGVKG PVKALDDTIE KSPFITTITY
ILLAYSLLAL FIVFLLNLRL
|
|---|
| |