| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1027 |
|---|
| Symbol | |
|---|
| ID | 4460929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1265069 |
|---|
| End bp | 1266658 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639701790 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_845156 |
|---|
| Protein GI | 116748469 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.13571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00932998 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCGC GGGCGGAATG CCGCCGGAGG TCGATCTTCA ACGACAGTCA GGCCGGGGAT
GCAGGGGCCT CGCGGTCCCG GTCGATGACC TTCGATGTGC AACGACCCGG TTTGAAACCC
GTCCCGCAGC CCCTGCCGGG TGAACCCCGC GACCTCATAC GGGAACGGTC TTCCGGTGAT
CCACAAAGCG CGGTCGAAAC TTCTGCTTCG CTCGCAACAG TACGCGAAAA ACAGAAAGAC
TTCATCGATA CCACTGAATG GGGGAAGCAA ATGGAGCGCC ACAGGATAAA CGTGTTTGTC
ATGATTCCGC TGCTGCTCGC GAGTCTTGCG CTGCTGCCGT TGCCGGGCGC GAGCGGCACG
GCGCGAGCCC AGGATGACGT TTTCCATCCC TATGCGCATG AACCGTGTCC GGATGTTGAC
GGGGCTGCAG CCTATCATGC GGCTTTTCCG GCGGGGTCCC CGTTTGGCTT GAATCCGGGC
GAGCGAGGGA TCCAGGACCA CATCAACGCC CGTCAACAAG CGGCTGACGG GATGGAGGGA
ACCTTCGCGG ACTCCGGATT TGCAGACCGC GGTCCGGACG ATCCGGCCGA AGGCTTGTCG
GAAGGTCCCG CGGAGCGGAT CCCCGCGGAT CCCTTGATGG TCAGCCCCCT GTCGCCCGCG
GGAACGATCA CCGATACGAC GCCGACCTAC AAGTGGACCA GGGAAGCCGG CGCCACGCAG
TACCGCTACC AGCTCATGAA AGGCACGACC ACCGTTTACA CCAGGACCGT CGGATCCGGC
GCCTGCGGAG CATCGACCTG CTCGAATACG CCCGCGACCG TCCTGGGTTT CGCCACGTAC
AAGTGGAGAG TGCGCGCGAT GGTGAACAAC GTCTGGAAGC CTTACAGCGC CTTCAAAACC
TTCACCGTGG CCAAGCCGAT CCCAACCCCC ATGGCGCCCG TCGGCACAAT CACGGACAGG
ACGCCCACGT ACCGGTGGAC GAAGATCAGC GGCGCGACGC AGTACCAGTA CCAACTCGTG
CAGGGCACGA CCACCGTATA CACCAGGACC GCCGGGGCCG GTGTCTGTGG GGCCTCGACC
TGCGCGAGCA CCCCTTCCAC CGCATTGCGT TACGCCACGT ATAAGTGGAG AGTGCGCGCG
ATGGTGAACG ATATCTGGAA ACCTTACAGC GCCTTCAAAA CGTTCACGGT CGAAAAGCCG
ATTCCGGGTT GCGACGCCGT CTTGCTCCCC GCACACAGCG GAGGGTGCAC TTTTCGTCTC
GTTACGCCTC AGAATTGCGA GGAGATCGAC CTGAGCGGGG GCAAGTACTA TGAATTCGCG
TGGTTCACGG ACGGCGTGTA TTGCGAGACC CCCTGGACCA TGTGCATAGC CGGCAATCCC
GCCAACGTCA CCACGGGGAA AAACATCTAT TGCGAGGATT TTTCCGCGGG TTCAACCGAT
TACATCACCC ATTACGGGGG GATCGTGTAC GTGGATGCGG AGGCGTTCAA TTCCCTGGGC
CTGACAACCG ATAACGGGAT CTATCACTGG GTGGTCATTA GCTTTTCCGG GGCCAACCCG
AACAGTCAAA CCTTCAGGGT CAAGCAATAA
|
|---|
| Protein sequence | MAPRAECRRR SIFNDSQAGD AGASRSRSMT FDVQRPGLKP VPQPLPGEPR DLIRERSSGD
PQSAVETSAS LATVREKQKD FIDTTEWGKQ MERHRINVFV MIPLLLASLA LLPLPGASGT
ARAQDDVFHP YAHEPCPDVD GAAAYHAAFP AGSPFGLNPG ERGIQDHINA RQQAADGMEG
TFADSGFADR GPDDPAEGLS EGPAERIPAD PLMVSPLSPA GTITDTTPTY KWTREAGATQ
YRYQLMKGTT TVYTRTVGSG ACGASTCSNT PATVLGFATY KWRVRAMVNN VWKPYSAFKT
FTVAKPIPTP MAPVGTITDR TPTYRWTKIS GATQYQYQLV QGTTTVYTRT AGAGVCGAST
CASTPSTALR YATYKWRVRA MVNDIWKPYS AFKTFTVEKP IPGCDAVLLP AHSGGCTFRL
VTPQNCEEID LSGGKYYEFA WFTDGVYCET PWTMCIAGNP ANVTTGKNIY CEDFSAGSTD
YITHYGGIVY VDAEAFNSLG LTTDNGIYHW VVISFSGANP NSQTFRVKQ
|
|---|
| |