| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1007 |
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| Symbol | |
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| ID | 4460943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1237101 |
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| End bp | 1238774 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639701770 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_845136 |
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| Protein GI | 116748449 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.607179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA AGTTTCGGAA AAAATCGGGA GAATTCTTCA TAGGCCTGAT TTCGTCCGAC
ATCGTGACGT TCAAGGGGGA GCGCTGCCTG CTGTCGGTGA CGACCGACAT CACGGAGCTG
CGGCTGGCAA GGGACGCGCT CGTCATGAGC GAAAAAAGGT ACCGGGAATT GGTCCAGAGC
GCGAACAGCA TCATTTTGCG GATGGATACC AAAGGGCGCG TCACGTTTCT CAACGAGTTC
GCCCAGACGT TTTACGGCTA CTCGGACGAC GAAATCCTGG GGAAAAACAT CCTGGACGCC
ATCGTTCCCG AAAAGGATTC TCTGGGACGT GATCTGACGC TGATGATTCG GGACATTCTG
CGCGATCCGG ATCGTTTTCC CAACAATGAA TATGAAAACA TCCGCAAAAA CGGCGAGCGG
GTCTGGGTCG CATGGGCCAA CAAGGGAATC TATGATCAGG ACGGCCGGCT CGTGGAAATC
CTCTCCATTG GAAACGACAT CACACATCAG AAGCTCCTGG AGGAACAGTA CCGGCAGGCC
CAGAAAATGG AAGCCATCGG CTTGCTGGCG GGCGGTGTCG CCCACGATTT CAATAACCTG
CTGGGCGTGA TCATGGGCTA TTCCGAGCTC TGCTTGACGA CCATCCACAA GGAGAGCCCT
CTTTACGACA ACATCGAGCA CATCAAGAAC GCGGGGTTGC GTGCCGCAAC GCTGGTCCGG
CAGTTGCTGG CCTTCAGCCG CAAGCAAATT CTCGATCCAA GAGTGGTGGA TCTCAACACG
ATCATCTCGG AGACCGAGAA GATGCTCCGG CGCCTGATCG GCGAGGATAT CCAACTGGAA
TCCACGCTCG AGCCCGATCT CTGGCCGGTG AGAATCGACC CGAGCCAGCT CGAGCAGGTC
ATCCTGAACC TTGCCGTGAA CGCGCGCGAT GCGATGCCGG ATGGCGGCAG GCTCACGATC
CGAACGGCCA ATGTCACTCT GGATGACTCA TTCGCGCGCG AACAGGTGGA GGCTGTCGCG
GGGCCCTACG TGCTCCTCGA GGTGACCGAC AACGGCGCGG GCATCGACAA GGACACGCTG
CGTCGAATTT TCGAACCGTT TTTCACCACC AAGGAAAAGG GAAGGGGCAC CGGCCTGGGA
TTGGCGACGG TCTACGGCAT CATCAAACAA AGCTCCGGCC ATATCTCCGT GCGGAGCCGA
CCGCGGTGCG GAACGACCTT CAGCATCTAT CTGCCCAGGG TGGAGGAGGT TGCCGAAGCC
GAGCGGTATC CCCGCGCGGG AGCCGATGCC TATCCGAGAG GATCCGAAAC CATATTGCTC
GTGGAAGATG AAGCGCTGTT GAAGACGATG ATCGGCCAGA CCCTGCGCAG GCACGGCTAC
ACCGTCCTGG AGGCAGCGGA CGGGGAATCG GCTCTCAAGG TTGAGGCCGG ACATGCGGGC
CCGATTCATC TGCTGGTCAC CGATGTCGTC ATGCCGGGCA TGAACGGGCA CCAACTCGCG
CAAAAGCTCG CGGCGGCCCG CCCGGAAACC ACGGTGCTCT ATATAACAGG GTACGCCGAC
GACCCCACCG TGCGAAGGGA ATTGTCGGAT GCAACACGGG CTATCCTCCA GAAGCCTTTC
ACCTCGGAGG TCCTCACGCA AAAGATCAGG GGACTCCTCG ACGGCACCGA ATGA
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| Protein sequence | MEIKFRKKSG EFFIGLISSD IVTFKGERCL LSVTTDITEL RLARDALVMS EKRYRELVQS
ANSIILRMDT KGRVTFLNEF AQTFYGYSDD EILGKNILDA IVPEKDSLGR DLTLMIRDIL
RDPDRFPNNE YENIRKNGER VWVAWANKGI YDQDGRLVEI LSIGNDITHQ KLLEEQYRQA
QKMEAIGLLA GGVAHDFNNL LGVIMGYSEL CLTTIHKESP LYDNIEHIKN AGLRAATLVR
QLLAFSRKQI LDPRVVDLNT IISETEKMLR RLIGEDIQLE STLEPDLWPV RIDPSQLEQV
ILNLAVNARD AMPDGGRLTI RTANVTLDDS FAREQVEAVA GPYVLLEVTD NGAGIDKDTL
RRIFEPFFTT KEKGRGTGLG LATVYGIIKQ SSGHISVRSR PRCGTTFSIY LPRVEEVAEA
ERYPRAGADA YPRGSETILL VEDEALLKTM IGQTLRRHGY TVLEAADGES ALKVEAGHAG
PIHLLVTDVV MPGMNGHQLA QKLAAARPET TVLYITGYAD DPTVRRELSD ATRAILQKPF
TSEVLTQKIR GLLDGTE
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