Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_1007 |
Symbol | |
ID | 4460943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 1237101 |
End bp | 1238774 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639701770 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_845136 |
Protein GI | 116748449 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.607179 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATCA AGTTTCGGAA AAAATCGGGA GAATTCTTCA TAGGCCTGAT TTCGTCCGAC ATCGTGACGT TCAAGGGGGA GCGCTGCCTG CTGTCGGTGA CGACCGACAT CACGGAGCTG CGGCTGGCAA GGGACGCGCT CGTCATGAGC GAAAAAAGGT ACCGGGAATT GGTCCAGAGC GCGAACAGCA TCATTTTGCG GATGGATACC AAAGGGCGCG TCACGTTTCT CAACGAGTTC GCCCAGACGT TTTACGGCTA CTCGGACGAC GAAATCCTGG GGAAAAACAT CCTGGACGCC ATCGTTCCCG AAAAGGATTC TCTGGGACGT GATCTGACGC TGATGATTCG GGACATTCTG CGCGATCCGG ATCGTTTTCC CAACAATGAA TATGAAAACA TCCGCAAAAA CGGCGAGCGG GTCTGGGTCG CATGGGCCAA CAAGGGAATC TATGATCAGG ACGGCCGGCT CGTGGAAATC CTCTCCATTG GAAACGACAT CACACATCAG AAGCTCCTGG AGGAACAGTA CCGGCAGGCC CAGAAAATGG AAGCCATCGG CTTGCTGGCG GGCGGTGTCG CCCACGATTT CAATAACCTG CTGGGCGTGA TCATGGGCTA TTCCGAGCTC TGCTTGACGA CCATCCACAA GGAGAGCCCT CTTTACGACA ACATCGAGCA CATCAAGAAC GCGGGGTTGC GTGCCGCAAC GCTGGTCCGG CAGTTGCTGG CCTTCAGCCG CAAGCAAATT CTCGATCCAA GAGTGGTGGA TCTCAACACG ATCATCTCGG AGACCGAGAA GATGCTCCGG CGCCTGATCG GCGAGGATAT CCAACTGGAA TCCACGCTCG AGCCCGATCT CTGGCCGGTG AGAATCGACC CGAGCCAGCT CGAGCAGGTC ATCCTGAACC TTGCCGTGAA CGCGCGCGAT GCGATGCCGG ATGGCGGCAG GCTCACGATC CGAACGGCCA ATGTCACTCT GGATGACTCA TTCGCGCGCG AACAGGTGGA GGCTGTCGCG GGGCCCTACG TGCTCCTCGA GGTGACCGAC AACGGCGCGG GCATCGACAA GGACACGCTG CGTCGAATTT TCGAACCGTT TTTCACCACC AAGGAAAAGG GAAGGGGCAC CGGCCTGGGA TTGGCGACGG TCTACGGCAT CATCAAACAA AGCTCCGGCC ATATCTCCGT GCGGAGCCGA CCGCGGTGCG GAACGACCTT CAGCATCTAT CTGCCCAGGG TGGAGGAGGT TGCCGAAGCC GAGCGGTATC CCCGCGCGGG AGCCGATGCC TATCCGAGAG GATCCGAAAC CATATTGCTC GTGGAAGATG AAGCGCTGTT GAAGACGATG ATCGGCCAGA CCCTGCGCAG GCACGGCTAC ACCGTCCTGG AGGCAGCGGA CGGGGAATCG GCTCTCAAGG TTGAGGCCGG ACATGCGGGC CCGATTCATC TGCTGGTCAC CGATGTCGTC ATGCCGGGCA TGAACGGGCA CCAACTCGCG CAAAAGCTCG CGGCGGCCCG CCCGGAAACC ACGGTGCTCT ATATAACAGG GTACGCCGAC GACCCCACCG TGCGAAGGGA ATTGTCGGAT GCAACACGGG CTATCCTCCA GAAGCCTTTC ACCTCGGAGG TCCTCACGCA AAAGATCAGG GGACTCCTCG ACGGCACCGA ATGA
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Protein sequence | MEIKFRKKSG EFFIGLISSD IVTFKGERCL LSVTTDITEL RLARDALVMS EKRYRELVQS ANSIILRMDT KGRVTFLNEF AQTFYGYSDD EILGKNILDA IVPEKDSLGR DLTLMIRDIL RDPDRFPNNE YENIRKNGER VWVAWANKGI YDQDGRLVEI LSIGNDITHQ KLLEEQYRQA QKMEAIGLLA GGVAHDFNNL LGVIMGYSEL CLTTIHKESP LYDNIEHIKN AGLRAATLVR QLLAFSRKQI LDPRVVDLNT IISETEKMLR RLIGEDIQLE STLEPDLWPV RIDPSQLEQV ILNLAVNARD AMPDGGRLTI RTANVTLDDS FAREQVEAVA GPYVLLEVTD NGAGIDKDTL RRIFEPFFTT KEKGRGTGLG LATVYGIIKQ SSGHISVRSR PRCGTTFSIY LPRVEEVAEA ERYPRAGADA YPRGSETILL VEDEALLKTM IGQTLRRHGY TVLEAADGES ALKVEAGHAG PIHLLVTDVV MPGMNGHQLA QKLAAARPET TVLYITGYAD DPTVRRELSD ATRAILQKPF TSEVLTQKIR GLLDGTE
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