Gene Sfum_0838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0838 
Symbol 
ID4461043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1040964 
End bp1041683 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content61% 
IMG OID639701600 
ProductABC transporter related 
Protein accessionYP_844970 
Protein GI116748283 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTTTC TGGAACTGGC AGACCTGCGC GTGAAATACG GGAACATCGA AGTGATCCAC 
GGAATCAATG TCCGGGTCGA GGAAGGAGAC ATCATCGCCA TCCTCGGCGC CAACGGCGCC
GGGAAATCGA CCACTCTGCT CACCATCAGC GGCCTGGTGA AACCGTCCGG AGGATCGATT
TCTTTCCGGG ACGCTCCCAT CCATCGGTTT CCGGCTCACA CCATCGTGAA GCTCGGAATC
GCCCAGGTCC CCGAGGGGCG AAGGGTATTC GGCACGCTGA CAGTGCGCGA GAACCTCAAC
CTGGGCTCCT TCGTCAGCAA GGACAAGCAG GCGATCTCAA AGACCCTGGC CTGGATCTAC
GAGCTGTTTC CGATCCTTTC GGAGCGCCGC GAACAACTTG CCGGCACTCT GAGCGGCGGG
GAGCAGCAGA TGCTGGCCAT CGGGCGCGCA CTCATGAGCC GCCCGAAGAT CCTTTTGCTG
GATGAACCGA GCCTCGGTCT TGCGCCGTTG CTGGTCATGA CCATTTTGCA GACCCTGCGC
GAAATCAACC GTTCGGGCGT CACCATCGTC CTGGTGGAAC AGAACGCACG GGCGGCCCTC
AAGCTCGCCC ACCGCGGATA CGTGCTCGAG CTGGGAAACG TGGTGATAGA AGACGACTCC
GCCGCGCTGA TCGCCAATGC GGAAGTCCAG GCCGCTTATC TCGGAGGCGG AATCGCCTGA
 
Protein sequence
MAFLELADLR VKYGNIEVIH GINVRVEEGD IIAILGANGA GKSTTLLTIS GLVKPSGGSI 
SFRDAPIHRF PAHTIVKLGI AQVPEGRRVF GTLTVRENLN LGSFVSKDKQ AISKTLAWIY
ELFPILSERR EQLAGTLSGG EQQMLAIGRA LMSRPKILLL DEPSLGLAPL LVMTILQTLR
EINRSGVTIV LVEQNARAAL KLAHRGYVLE LGNVVIEDDS AALIANAEVQ AAYLGGGIA