| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0815 |
|---|
| Symbol | |
|---|
| ID | 4460176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 1008422 |
|---|
| End bp | 1009162 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639701577 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_844947 |
|---|
| Protein GI | 116748260 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.040259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0721562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGACGA AATACTCTCT CATCATCCGC GTGCTCATCG TCCTGGGAAC GGGAGGCTGC
CTGGTCTTCC TGTTCGGCCG GATCGAGTAT CCCTGGAACT GGAGGGTTCC ATGGGAATAC
CGGTGGCTTT TCTTTCGCGG CTTCTACACC ACGTTCATTA TCGCCGTCGG GGCCACATCG
ATGGGCTTCT GCCTCGGCGT CTTCGGGGGA ATCGCGCGGA CTTCCCGGTC GGTCCTGGCC
AGGGAGACGG CGATGCTGTA CGTGGAGTTC TTTCGAGGCA CGCCTCTGCT GATTCAGATC
TATATCTTCT ATTTCTGTGT GGCGGCGGCC GTACATTACG ACAATCCGGT GATCATCGGC
ATGTTCTCTC TGGCCGTGTT TTCAGGCGCC TATATCACGG AGATGGTGAG AGCCGGGATT
GAATCCATCG ACCGGGGTCA GATCGAGGCC GCCATGTCCA CCGGCTTGAA CGACTGGGAA
ACCATGCGAT ACGTCGTCTT CCCTCAAGCC TTCCGGCGAA TCATTCCCCC CGTCGCAGGC
CAGTTCGTCT CCGTTATCAA GGATTCGTCC CTGCTCTCGG TGATTTCCGT GCGCGAGCTG
ACCAAGGCGT CGGAAATCAT CAACGCAACC ACCTACAAGA CTTTCGAGGC CTACTTGCCG
CTGGCTGCGC TATACCTTAT CATTACGTAT CCGCTTTCCT ATCTGACCCA GCGCCTCGAA
CAAAAAATCA AGCACGATTG A
|
|---|
| Protein sequence | MRTKYSLIIR VLIVLGTGGC LVFLFGRIEY PWNWRVPWEY RWLFFRGFYT TFIIAVGATS
MGFCLGVFGG IARTSRSVLA RETAMLYVEF FRGTPLLIQI YIFYFCVAAA VHYDNPVIIG
MFSLAVFSGA YITEMVRAGI ESIDRGQIEA AMSTGLNDWE TMRYVVFPQA FRRIIPPVAG
QFVSVIKDSS LLSVISVREL TKASEIINAT TYKTFEAYLP LAALYLIITY PLSYLTQRLE
QKIKHD
|
|---|
| |