Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0570 |
Symbol | |
ID | 4461221 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 694344 |
End bp | 695870 |
Gene Length | 1527 bp |
Protein Length | 508 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639701326 |
Product | NifA subfamily transcriptional regulator |
Protein accession | YP_844704 |
Protein GI | 116748017 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.106051 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.50757 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAA ACTACAACCT GGAAGAACTG CGGACACTCC ACGAAATCGC GAGAGTGGTA TCGCGTTCCG CCGAATTGAA GGATCAGCTT CAGCAAACGC TGGACATTCT CAGCTCGCGG CTGGGCATGG AAAGGGGTAT GGTCTCGGTG CTGGATCTCC AGACGGGGGA GGCATGGCTG GACGTGGCCC GCGGGGTTGA CGTCGAGAGG GGCACCATCC GTTATCGGCC CGGGGAGGGG ATCACCGGCA AGGTCGCCCA GAGCGGCCGT CCGATGGGGA TTGCCAACCT GGGTGATGAG GCGCTCTTCC TGGACCGCAC CGGGGCGAGG CGTTCGCTCA ACCGCGAGGA ACTGGCCTTC CTGTGCGTGC CGATTTTCTA TCAGGGCAGG AGCGTGGGGG TGCTCTCGGC CGACAAGCTG GCTCGCCGGG TGGAGGACCT CGACAAGGAA GTCGAAATCC TGTCGGCCGT GGCGGAGCTC CTGGGCAAGG TGGTCCATTT TCGCGCGGTG GAAGAGGAGA ATAGCCGTCT GCGGCGCATG CTGGCCGAGG CCCGACGGCC CACGACGAAC ATCATCGGCC GGTCCAAGGT GATCCAGGAG GTGTTGAGGG CCATCGACCA GGTGGCGGAC ACCAACACCA CGGTGCTCAT TTCGGGGGAA ACCGGGACCG GCAAGGAATT GGTGGCCAGG GCCATCCACG ACAACAGTCG CAGAGCCAAG GGGCCGCTGG TCCAGGTCAA CTGCGCCGCC ATGCCGGACA CTCTCCTGGA AAGCGAGCTG TTCGGTCACG AGAAGGGGGC TTTCACCGGC GCCGTCACGC GCAGGCGCGG GCGCTTCGAA GAAGCCCAGG GCGGAACGAT CTTCCTGGAC GAGGTGGGCG AGCTGTCTCC CATCGCACAG GCGAAGCTGC TGCGCGTTCT CCAGGAACGC GAATTCCAGC CTCTCGGTTC CTCGCGGACG GTCAAGGTGG ATGTCCGTGT CATTACGGCG TCCAACAAGG ATTTGGAAAA GGAAGTCGCG CTGGGGACCT TCCGGTCCGA TCTCTACTAC CGGCTGAACG TGTTCCCGAT TTTCCTCCCG CCGCTCAGGG AACGCGGACC GGATATTCTG CTGCTCGCCG ATTATTTCGT GCTCAAGTAC GCGCGGGAAC TGGACAAGGA TGTGAAGCGA ATCACCACCA GCGCCATCGA CATGCTCATG TGCTATCACT GGCCCGGGAA TGTCCGGGAG TTGGAGAACT GCATCGAACG GGCCGTGCTG CTCGCCGGCG GGAATGCCGT CGATTCCTGG CATCTGCCGC CGACGCTTCA GATGAAGCCG GTCGGAATGC AGAACGTCAG CCGGGGAAAG CTCGAGGCAC TGGTGAGCGC CTTCGAAAGG GACCTCATCA CGGACGCCCT CAAAGACGTG CGCGGCAACC AGTCCCAGGC CGCCCGTCTC CTGGGCACCA CCAAGCGGAT CGTTCAATAC AAGGTGGAAA AATACGGCAT CGATCCGAGG CGCTTCCGGG TCAAGGCCCC GGCATAG
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Protein sequence | MSENYNLEEL RTLHEIARVV SRSAELKDQL QQTLDILSSR LGMERGMVSV LDLQTGEAWL DVARGVDVER GTIRYRPGEG ITGKVAQSGR PMGIANLGDE ALFLDRTGAR RSLNREELAF LCVPIFYQGR SVGVLSADKL ARRVEDLDKE VEILSAVAEL LGKVVHFRAV EEENSRLRRM LAEARRPTTN IIGRSKVIQE VLRAIDQVAD TNTTVLISGE TGTGKELVAR AIHDNSRRAK GPLVQVNCAA MPDTLLESEL FGHEKGAFTG AVTRRRGRFE EAQGGTIFLD EVGELSPIAQ AKLLRVLQER EFQPLGSSRT VKVDVRVITA SNKDLEKEVA LGTFRSDLYY RLNVFPIFLP PLRERGPDIL LLADYFVLKY ARELDKDVKR ITTSAIDMLM CYHWPGNVRE LENCIERAVL LAGGNAVDSW HLPPTLQMKP VGMQNVSRGK LEALVSAFER DLITDALKDV RGNQSQAARL LGTTKRIVQY KVEKYGIDPR RFRVKAPA
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