Gene Sfum_0564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0564 
Symbol 
ID4461215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp686315 
End bp687388 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content63% 
IMG OID639701320 
Productqueuosine biosynthesis protein 
Protein accessionYP_844698 
Protein GI116748011 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0809] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 
TIGRFAM ID[TIGR00113] S-adenosylmethionine:tRNA ribosyltransferase-isomerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0641746 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.715932 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGATG AGCGCATTTC CTACCGACTC CGGGAATACG ACTACGATCT CCCTCCCTCC 
CTGATCGCAC AATCCCCCTT ATCCCGAAGG GAGGAATCCC GTCTTCTCGT GCTGGACCGA
GGCCGCGGCG CGATGGATCA CGTTCGCTTC CGGGATTTGC CGGACCATCT GCACGCCGAA
GACCTGCTGG TGGTCAACGA CACCCGGGTG GTGCCGGCGC GTTTGATCGG CTTCAAGGAT
TCGGGCGGCA GGATCGAATT GCTGGTGACG GAACCCTACA AAAGCGAAGC CGAAGGGCGG
CGGGACGGTT ACTGGTGTCT TGCCGCGGCC GCAAAACGCA CCCGGCCCGG ATGCCTGATC
TCGCTTCCCG ACGGTACGGT CGCTGAAGTT CTCGAGGCAG GCGACGGCGG GCGGATTCGA
GTCCGGTTCC CTGACGACCG CCCGCTGATG ACGATCCTCT CGGAGATTGG AGCGGTGCCG
CTTCCGCCAT ACATCAACCG GAGCGGAACC GGTGACTTTC CCGGAGACGC CGAAGCCTAC
CAGACGGTGT ATGCGCGAAA TCCCGGAGCC GTGGCCGCGC CGACCGCCGG CCTTCACTTC
AGCTCGGCAC TGCTGGAGGC CGTCGCACGG GCGGGGGTCG AAGTCGTCCG GATTACCCTT
CATGTGGGAT ACGGCACCTT CGCCCCCATC AGGGTCGACG ATATCCGGGA CCACGAGATG
CATCCGGAAT ACGTGCGGGT GGACGAGGAT TCGACGGAGC GGATCAGGTC CGCGATCGAT
CGGAAAAGAC GTATCGTCGC GGTGGGAACC ACGGTCGTGA GGAGTTTGGA GTGGATCGCC
CACCGGCGCG GCGAAATCAT GCCGGCCGCG GGGGCCTGCG CGCACTACAT CTACCCGGGC
TACCGGTTCA AAGTCGTAGA TGCGATGATC ACCAATTTCC ACCTTCCCAG GTCCTCCCTT
CTTCTGCTCG TTTCGGCGTT TGCCGGGCGC CGCCGAATCC TGGAAGCATA CCGGGAAGCG
ATCCGCCGTG AGTACCGGTT TTTCAGTTAC GGCGATGCGA TGCTGATTCT GTAG
 
Protein sequence
MADERISYRL REYDYDLPPS LIAQSPLSRR EESRLLVLDR GRGAMDHVRF RDLPDHLHAE 
DLLVVNDTRV VPARLIGFKD SGGRIELLVT EPYKSEAEGR RDGYWCLAAA AKRTRPGCLI
SLPDGTVAEV LEAGDGGRIR VRFPDDRPLM TILSEIGAVP LPPYINRSGT GDFPGDAEAY
QTVYARNPGA VAAPTAGLHF SSALLEAVAR AGVEVVRITL HVGYGTFAPI RVDDIRDHEM
HPEYVRVDED STERIRSAID RKRRIVAVGT TVVRSLEWIA HRRGEIMPAA GACAHYIYPG
YRFKVVDAMI TNFHLPRSSL LLLVSAFAGR RRILEAYREA IRREYRFFSY GDAMLIL