Gene Sfum_0551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0551 
Symbol 
ID4461202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp669250 
End bp671208 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content60% 
IMG OID639701307 
ProductATP-dependent metalloprotease FtsH 
Protein accessionYP_844685 
Protein GI116747998 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0465] ATP-dependent Zn proteases 
TIGRFAM ID[TIGR01241] ATP-dependent metalloprotease FtsH 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.66681 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGTCCGT TCTATAAAAA TCTGGCCCTA TGGCTGGTCA TCAGCCTTAT GGTGATTTTG 
TTGTTCAACA TGCTGCAAAA ACCCCAGAGC TCCAGCATCG AGACCACCTA CAGCCAACTG
ATGGCCTCGG TTCAGAAAGG GGAAGTCGCA AAGGTCACCA TCCAGGGCGA TCGCATTCTG
GGAACCTACA ATGACGGCAA GCTCTTCCGC ACCCACGTTC CCAGAGACCC GGATATGATC
AAGATGCTCA GGGACCACGG GGTCGACATC CAGGCCAAGC CCGAGGAGGA AAACCCCTGG
TACGTGTCGG TCCTGGTGAA CTGGTTTCTC CCTATGCTCC TGCTGGTGGG GATGCTGATT
TTCTTCATGC GCCAGATGCA GGTGGGCGGC GGAAAAGCCA TGAGCTTCGG CAAGAGCCGG
GCCCGGCTGC TCAATGAGAA TTCAAAGAAA GTCCTGTTCA ACGACGTCGC GGGCATTGAC
GAAGCCAAGG AAGAACTGCA GGAGATTGTT GAATTTCTTA AAGATCCCCG TAAGTTCACG
CGCCTGGGGG GCAGGATTCC CAAAGGCGTC CTCCTGGTGG GGGCTCCCGG CACGGGAAAA
ACCCTTCTTG CAAAAGCCAT TGCCGGGGAA GCCGGCGTTC CCTTTTTCAC CATCAGCGGT
TCGGATTTTG TGGAGATGTT CGTCGGGGTA GGTGCGTCCC GGGTCCGGGA TCTGTTCATG
CAGGGCAAGA AGAACGCCCC GTGCATCATA TTCATCGACG AAATCGATGC CGTCGGGCGG
CACCGCGGCG CCGGCCTGGG TGGAGGACAT GACGAACGCG AACAGACACT CAACCAGTTG
CTGGTGGAAA TGGACGGATT CGAGTCCAAC GAGGGCGTGA TTCTCATTGC GGCCACCAAC
CGTCCCGACG TATTGGACCC GGCTCTGCTC AGACCGGGCC GCTTCGACCG GCAGGTGGTG
GTGCCCGTCC CCGATATCCG CGGACGAGAA GGCATTCTGC ATGTCCATCT GCGGGCCAAG
CCCCTGGCTC CCGACGTCGA TCCCAAAGTC CTGGCGAAGG GAACCCCCGG GTTTTCGGGG
GCCGACCTCG AGAATCTGGT GAACGAGGCG GCCCTGCTTG CCGCTCGTAA GAACAAGGAT
CTCATCGACA TGGCCGATTT CGAATCGGCC AAAGACAAGG TGATGATGGG CCTGGAGCGC
AAGAGTATGA TCCTTACGGA GGAGGAGAAG CGCAACACCG CCTATCACGA AGCCGGGCAT
GCGCTCGTGG CCAGGCTGCT GCCGGGGGCC GATCCGCTCC ACAAGGTGAC CATCATCCCG
CGGGGACGCG CGCTGGGGCT CACCCAGCAA CTCCCTGAAG ACGACCGCCA CACCTATTCG
AGGGACTACC TGCTGGACAG CATCGCCATC CTGATGGGCG GACGCGTGGC CGAGGAACTG
GCGTTCAACC AGCGGACCAC GGGCGCCTCC AACGACATCA AACGCGCCAC TCAGCTCGCC
CGTCGCATGG TGTGTGAATG GGGCATGAGC GAGGATATGG GCCCGGTCAG TTTCGGAAGG
CAGGAAGAAC AGGTTTTTCT GGGGCGCGAT ATTGCGCAAC ACCGCGACTT CAGCGAGCAG
ACCGCCATTT TCATCGACAA GGAGGTCCGC CGGATTGTCG ATGAAAACTA CCTTCGTGCC
CGACAGATGC TGAGCGACCG CTTCACTCTA TTGGAGAAGA TCGCCGAGGG GCTGCTCGAA
AGGGAAACCC TCGACCTGCG GGACATCGAT CGGATCATCC TCGAGGTCGA CCCGGGGCTA
TACGATGAGA TCAAGCGCAG GGAGCCTCCG CGCCCCCCGG AACTTGAAAT TGCCGTAGAC
GGCGTCGGCA CGCAGGAAGC CGTCGCGGAA CAGCCCGAAG GAGGCACGGC ATCGCCGGAT
TCCACTTCCG CCTCCGAGCA GAAGAATCAG GGCACTTGA
 
Protein sequence
MSPFYKNLAL WLVISLMVIL LFNMLQKPQS SSIETTYSQL MASVQKGEVA KVTIQGDRIL 
GTYNDGKLFR THVPRDPDMI KMLRDHGVDI QAKPEEENPW YVSVLVNWFL PMLLLVGMLI
FFMRQMQVGG GKAMSFGKSR ARLLNENSKK VLFNDVAGID EAKEELQEIV EFLKDPRKFT
RLGGRIPKGV LLVGAPGTGK TLLAKAIAGE AGVPFFTISG SDFVEMFVGV GASRVRDLFM
QGKKNAPCII FIDEIDAVGR HRGAGLGGGH DEREQTLNQL LVEMDGFESN EGVILIAATN
RPDVLDPALL RPGRFDRQVV VPVPDIRGRE GILHVHLRAK PLAPDVDPKV LAKGTPGFSG
ADLENLVNEA ALLAARKNKD LIDMADFESA KDKVMMGLER KSMILTEEEK RNTAYHEAGH
ALVARLLPGA DPLHKVTIIP RGRALGLTQQ LPEDDRHTYS RDYLLDSIAI LMGGRVAEEL
AFNQRTTGAS NDIKRATQLA RRMVCEWGMS EDMGPVSFGR QEEQVFLGRD IAQHRDFSEQ
TAIFIDKEVR RIVDENYLRA RQMLSDRFTL LEKIAEGLLE RETLDLRDID RIILEVDPGL
YDEIKRREPP RPPELEIAVD GVGTQEAVAE QPEGGTASPD STSASEQKNQ GT