| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0551 |
|---|
| Symbol | |
|---|
| ID | 4461202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 669250 |
|---|
| End bp | 671208 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639701307 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_844685 |
|---|
| Protein GI | 116747998 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.66681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCCGT TCTATAAAAA TCTGGCCCTA TGGCTGGTCA TCAGCCTTAT GGTGATTTTG
TTGTTCAACA TGCTGCAAAA ACCCCAGAGC TCCAGCATCG AGACCACCTA CAGCCAACTG
ATGGCCTCGG TTCAGAAAGG GGAAGTCGCA AAGGTCACCA TCCAGGGCGA TCGCATTCTG
GGAACCTACA ATGACGGCAA GCTCTTCCGC ACCCACGTTC CCAGAGACCC GGATATGATC
AAGATGCTCA GGGACCACGG GGTCGACATC CAGGCCAAGC CCGAGGAGGA AAACCCCTGG
TACGTGTCGG TCCTGGTGAA CTGGTTTCTC CCTATGCTCC TGCTGGTGGG GATGCTGATT
TTCTTCATGC GCCAGATGCA GGTGGGCGGC GGAAAAGCCA TGAGCTTCGG CAAGAGCCGG
GCCCGGCTGC TCAATGAGAA TTCAAAGAAA GTCCTGTTCA ACGACGTCGC GGGCATTGAC
GAAGCCAAGG AAGAACTGCA GGAGATTGTT GAATTTCTTA AAGATCCCCG TAAGTTCACG
CGCCTGGGGG GCAGGATTCC CAAAGGCGTC CTCCTGGTGG GGGCTCCCGG CACGGGAAAA
ACCCTTCTTG CAAAAGCCAT TGCCGGGGAA GCCGGCGTTC CCTTTTTCAC CATCAGCGGT
TCGGATTTTG TGGAGATGTT CGTCGGGGTA GGTGCGTCCC GGGTCCGGGA TCTGTTCATG
CAGGGCAAGA AGAACGCCCC GTGCATCATA TTCATCGACG AAATCGATGC CGTCGGGCGG
CACCGCGGCG CCGGCCTGGG TGGAGGACAT GACGAACGCG AACAGACACT CAACCAGTTG
CTGGTGGAAA TGGACGGATT CGAGTCCAAC GAGGGCGTGA TTCTCATTGC GGCCACCAAC
CGTCCCGACG TATTGGACCC GGCTCTGCTC AGACCGGGCC GCTTCGACCG GCAGGTGGTG
GTGCCCGTCC CCGATATCCG CGGACGAGAA GGCATTCTGC ATGTCCATCT GCGGGCCAAG
CCCCTGGCTC CCGACGTCGA TCCCAAAGTC CTGGCGAAGG GAACCCCCGG GTTTTCGGGG
GCCGACCTCG AGAATCTGGT GAACGAGGCG GCCCTGCTTG CCGCTCGTAA GAACAAGGAT
CTCATCGACA TGGCCGATTT CGAATCGGCC AAAGACAAGG TGATGATGGG CCTGGAGCGC
AAGAGTATGA TCCTTACGGA GGAGGAGAAG CGCAACACCG CCTATCACGA AGCCGGGCAT
GCGCTCGTGG CCAGGCTGCT GCCGGGGGCC GATCCGCTCC ACAAGGTGAC CATCATCCCG
CGGGGACGCG CGCTGGGGCT CACCCAGCAA CTCCCTGAAG ACGACCGCCA CACCTATTCG
AGGGACTACC TGCTGGACAG CATCGCCATC CTGATGGGCG GACGCGTGGC CGAGGAACTG
GCGTTCAACC AGCGGACCAC GGGCGCCTCC AACGACATCA AACGCGCCAC TCAGCTCGCC
CGTCGCATGG TGTGTGAATG GGGCATGAGC GAGGATATGG GCCCGGTCAG TTTCGGAAGG
CAGGAAGAAC AGGTTTTTCT GGGGCGCGAT ATTGCGCAAC ACCGCGACTT CAGCGAGCAG
ACCGCCATTT TCATCGACAA GGAGGTCCGC CGGATTGTCG ATGAAAACTA CCTTCGTGCC
CGACAGATGC TGAGCGACCG CTTCACTCTA TTGGAGAAGA TCGCCGAGGG GCTGCTCGAA
AGGGAAACCC TCGACCTGCG GGACATCGAT CGGATCATCC TCGAGGTCGA CCCGGGGCTA
TACGATGAGA TCAAGCGCAG GGAGCCTCCG CGCCCCCCGG AACTTGAAAT TGCCGTAGAC
GGCGTCGGCA CGCAGGAAGC CGTCGCGGAA CAGCCCGAAG GAGGCACGGC ATCGCCGGAT
TCCACTTCCG CCTCCGAGCA GAAGAATCAG GGCACTTGA
|
|---|
| Protein sequence | MSPFYKNLAL WLVISLMVIL LFNMLQKPQS SSIETTYSQL MASVQKGEVA KVTIQGDRIL
GTYNDGKLFR THVPRDPDMI KMLRDHGVDI QAKPEEENPW YVSVLVNWFL PMLLLVGMLI
FFMRQMQVGG GKAMSFGKSR ARLLNENSKK VLFNDVAGID EAKEELQEIV EFLKDPRKFT
RLGGRIPKGV LLVGAPGTGK TLLAKAIAGE AGVPFFTISG SDFVEMFVGV GASRVRDLFM
QGKKNAPCII FIDEIDAVGR HRGAGLGGGH DEREQTLNQL LVEMDGFESN EGVILIAATN
RPDVLDPALL RPGRFDRQVV VPVPDIRGRE GILHVHLRAK PLAPDVDPKV LAKGTPGFSG
ADLENLVNEA ALLAARKNKD LIDMADFESA KDKVMMGLER KSMILTEEEK RNTAYHEAGH
ALVARLLPGA DPLHKVTIIP RGRALGLTQQ LPEDDRHTYS RDYLLDSIAI LMGGRVAEEL
AFNQRTTGAS NDIKRATQLA RRMVCEWGMS EDMGPVSFGR QEEQVFLGRD IAQHRDFSEQ
TAIFIDKEVR RIVDENYLRA RQMLSDRFTL LEKIAEGLLE RETLDLRDID RIILEVDPGL
YDEIKRREPP RPPELEIAVD GVGTQEAVAE QPEGGTASPD STSASEQKNQ GT
|
|---|
| |