| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0540 |
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| Symbol | |
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| ID | 4460578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 658509 |
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| End bp | 660419 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639701296 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_844674 |
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| Protein GI | 116747987 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.614076 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.439492 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTACG TCGGTTTTCG AAAAATGAGC TGTTTCGCTT TTGTATTGGT GTTTGCCTTG
TGCTGGGCTT GTGCGATTCC CGGCTCCGTC GAAGGCGGAT CCAGCCCGAA AGCCGGTGTT
GCGAGCCCGA GCCCTGCGGC AGCCACGCCG ACGGCCGAAT CTGCAACGGC GGGAAAAGGC
GCGAAGTTGT TGAGTGTCGC TATGGACGAA TCCGGGTTGG AGACGGTGCT CAGGATAGCG
GGCAGCGGCC CCTTGAAGGA TTATCAATTC CGGCGCCTGG GCGAAGACAG ATTCGTGCTG
GAAATCGGGG ATGTGACCGC CAGGGCGGCC AAGCCCGCGC TGCCCGGCAA GTCGAGCAGG
GTCAAGCTCA ACTATGCGCG AGCGAAGGCG GGGGTCCGGA TCGTCGGGAA TGTCCGGCAG
CCCATCAGTG ATTATACCGT CGACAGTGTC GACAACGACA TTGTTGTGAA CCTGCGTTTC
GCGGAAAAGA AGCAGGTTGC GGCGGCCGGC GCCGCTGCGG AGAAACCTGC CACGGCGGAA
AAGACCAGGC CGGGCAAGGC TGCGGCGCGC CGTGGAGCCG GCGATGCCGG GGAGGAAGTC
CAGGGGGCGG ACCAGCAGTT CCCCGAATAT TCAGCCACCA GGCCGGGGGG GGGAGCCCCC
GAATTGCGTC ATGCCAGGAA GCAGTACACG GGCAAACCGA TCAGCCTTGA TCTGCTCGAC
GCCGATCTGC GGAACGTCCT GCGGCTTCTG GCCGATCTGA CCGGGACGAA CATTGTGATC
GAACCGGACG TCACGGGCAA GGTGACCCTG AAGGTGGAAC AGGTCCCATG GGATCAGGTT
CTGGACATGA TCATATCCAT GAACGATCTG GGACAGGAGC AGGTCGGGAG CGTGATTCGC
ATCGCCAGGC GGAGCAAGCT CAAAAGCGAA TGGGCCCAGC AGGCGGAAGC CATCAGGGCC
AAGCAGGAAT ACCTGTTGAC CAGCAAGGAT CTGGGAGAGA TCAATACGGC ATATCTTACG
GTGAACTACG CCCAGGTGAC CGATGTCGCC AGCAAGATCA ACGAGGCGAA GAGCGATAAG
GGCAAGGTAT CCGTCGACGA GCGGACGAGC CTGATCATTT ACAGCGACTA TCCGGGCCGT
ATCAACAACG CCAGGATGCT TCTGAACAGG CTTGACCGGC CCACTTCCCA GGTGCTCATC
GAAGCCCGCA TCATCACGTT GACTTCGGAA GTCAAACGGT CCCTCGGCAT GAACCTGGGC
TTCGGCGGCG ATACCCCGAA TCATTCGGCG ACCGTGCCGT TCACGGATTT TCTGATCAAC
AGCCCGCCGG CCAATCTGTT CGCTCTGAAC CTTGCGCAGA TGGTCGGTAC GACGCTGCTG
AAAGTGGACC TCACTATTTC GGCCCTCGAA ACCGCCGACG AGATTCGCAT CATGGCGGCT
CCGAGAGTTC TGACCATGAA CAACGTCAAG GCAGTGATCT CCCAGGGTGT GCAAATTCCC
TACCTGAAGG TCGGCGATAC GGCATCCAAC ATCACGGGCA CGGATTTCAA GGACGCCGTG
CTCGAGCTCG CCGTGACGCC GCATATCACT CCTGACCACA AGGTGCGGAT GACCATCGAG
GCAAAACAGG ACGAACCCTC GAGCACCGTA ACCGGAGCGC AGGGGCAGCC CGGTATCGAT
ACGAGAAAGA TTTCCACGGA ACTGCTGGTG GATGACGGCA ACATCATTGT GATCGGCGGC
ATCATCCGAA ATCGGGATGA AGCCAAGAAG ACGGCCACGC CCGGACTCAG CGACGTCCCC
ATTCTGGGCA GGCTGTTCAA ATCAAACGAG GTCGATGCGC AAAGAAACGA AATTTTGATT
TTCATCTGCC CGAAAATTGT GGATGTGACG AAACCTTCTG ATCGCACATA G
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| Protein sequence | MHYVGFRKMS CFAFVLVFAL CWACAIPGSV EGGSSPKAGV ASPSPAAATP TAESATAGKG
AKLLSVAMDE SGLETVLRIA GSGPLKDYQF RRLGEDRFVL EIGDVTARAA KPALPGKSSR
VKLNYARAKA GVRIVGNVRQ PISDYTVDSV DNDIVVNLRF AEKKQVAAAG AAAEKPATAE
KTRPGKAAAR RGAGDAGEEV QGADQQFPEY SATRPGGGAP ELRHARKQYT GKPISLDLLD
ADLRNVLRLL ADLTGTNIVI EPDVTGKVTL KVEQVPWDQV LDMIISMNDL GQEQVGSVIR
IARRSKLKSE WAQQAEAIRA KQEYLLTSKD LGEINTAYLT VNYAQVTDVA SKINEAKSDK
GKVSVDERTS LIIYSDYPGR INNARMLLNR LDRPTSQVLI EARIITLTSE VKRSLGMNLG
FGGDTPNHSA TVPFTDFLIN SPPANLFALN LAQMVGTTLL KVDLTISALE TADEIRIMAA
PRVLTMNNVK AVISQGVQIP YLKVGDTASN ITGTDFKDAV LELAVTPHIT PDHKVRMTIE
AKQDEPSSTV TGAQGQPGID TRKISTELLV DDGNIIVIGG IIRNRDEAKK TATPGLSDVP
ILGRLFKSNE VDAQRNEILI FICPKIVDVT KPSDRT
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