Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0533 |
Symbol | |
ID | 4460571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 650093 |
End bp | 651862 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639701289 |
Product | pepF/M3 family oligoendopeptidase |
Protein accession | YP_844667 |
Protein GI | 116747980 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1164] Oligoendopeptidase F |
TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.18439 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.721981 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACC CCGCGGAACA TGTCGTCTGG AACCTCAACG ATCTATACAG CGGCCCCGAC GCGCCGGCGA TGGAGCAGGA CCGCCAATCG GCCAACGATC TCGCCGTGCA GTTCGCAGCC AGGTACCGAG GCAAGGTTGC CGCGCTTTCC CCCGAGGAAG CCTCTGCCGC CATACGGGAA TACGAAGCCC TGCAGGAAAT CCTGCAAAAG CTCGATGCCT ACGCCGCTCT CCATTTCGCC ACGCGGACGC GGGACCCGAG TACCGGCGCG CTGCTGCAGG CGATTCGCGA ATTTCGCAGC CAGGTTCATC GCGATACGCT GTTTTTCGAG CTCGAATGGG CTCAGATCGA CGACGAAGCC TTTGCGGCCG CCCTGCGACA CTCCGCACTC GGTCCCTACC GCCATTATCT GGAATTGTCC CGCCGTTACA GACCCCATCT GCTCACCGAG CCGGAAGAGA AGATCCTGGC GGAAAAGGAA CCCGTGGCCA ACGACTCCTG GACCACGCTT TTCGACAAGG TCCTGGGACA CCTCCGCTTC GGCCCGGGCG AGCGCACGGA ATCCGAAGTC CTGAGCGACC TCTACGCAGG CGATCGGACA GTCAGGCAAC AGGCCGCGCG CGAGCTGACG CAAGGCTTGA CGGAAATGCT TCCCGTTTTG ACCCACATCT TCAACACGAT CCTTTTGGAC AAGGCCGTTA CCGACCGGTT GCGCCGGTAT CCGCACTGGC TCAGGGCGAG GAATCTCGCC AACGAGGCGG AAGATGTAAT GGTGGAAGCT CTGGTTGAAG CCGTCTCTTC GCGTTACGAC GTCGTCCGGC GTTATTACCG GCTCAAGCGG ACGCTGCTCG GTTACGAAGA GCTGTTCGAC TACGACCGCT ATGCGCCCAT ACCCGGACTG CCGAAAAAGG CTTTTTCATG GGAGGAGGCA AAACACCTGG TACTTTCGGG TTTCGAAGCG TTTTCGCCGG AATTCGCTGA AATTGCGTCG GATTTCTTTC GTCACAACTG GATCCACGCC CCCGTGCTTC CCGGCAAACG CAGCGGAGCG TTTTCTCACC CCACCGTTCC TTCCTGCCAT CCGTACGTGC TCGTCAACTT CACGGGAACG TCCAGGGACG TGGCGACCCT CGCCCATGAA CTGGGGCATG GGGTCCACCA GGTTCTGGCG AGAAAACAGG GGCTGCTCAA CGCCGACACT CCGCTCACCC TGGCCGAAAC CGCCTCGGTG TTCGGGGAGA TGATCGTGTT TCGGCACCTT CTCGAACGGG TCGAATCCCG CAAGGAACGC GCCGCCCTGC TTTGCAGCAA GCTCGAAGAC TCTTTCGCGA CAGTGTTTCG CCAAGTGAGC ATGAACCGCT TCGAATCCGC CGTCCACAAC CAGCGCAGGT CCGGCGGAGA ACTCGACCCG GAGCGGATTT CACAATTCTG GCTCGATTCG CAGAAACAGA TGTTCGGGGA TTCCGTCACG CTCACCGGGG ACTACCGCAT ATGGTGGTCC TATATCCCCC ATTTCATTCA TTCCCCGGGC TACGTGTACG CCTATGCCTT CGGCGAGCTC CTGGTGCTCT CCCTCTACCG GCAGTACCGG CAGACGGGTG CATCCTTCGT GCCCCTCTTC CGCGACCTCC TCGAAGCCGG TGGAAAAGCA AGCCCGAATG AGCTCCTGTC GCCTTTCGGC ATTGATCTTT CAGACCCTTC CTTCTGGAAA CGGGGGCTGG AGGTGATCGA AGGGATGTTG GACGAGGCGG AACAATACGC TCGATCCTGA
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Protein sequence | MNDPAEHVVW NLNDLYSGPD APAMEQDRQS ANDLAVQFAA RYRGKVAALS PEEASAAIRE YEALQEILQK LDAYAALHFA TRTRDPSTGA LLQAIREFRS QVHRDTLFFE LEWAQIDDEA FAAALRHSAL GPYRHYLELS RRYRPHLLTE PEEKILAEKE PVANDSWTTL FDKVLGHLRF GPGERTESEV LSDLYAGDRT VRQQAARELT QGLTEMLPVL THIFNTILLD KAVTDRLRRY PHWLRARNLA NEAEDVMVEA LVEAVSSRYD VVRRYYRLKR TLLGYEELFD YDRYAPIPGL PKKAFSWEEA KHLVLSGFEA FSPEFAEIAS DFFRHNWIHA PVLPGKRSGA FSHPTVPSCH PYVLVNFTGT SRDVATLAHE LGHGVHQVLA RKQGLLNADT PLTLAETASV FGEMIVFRHL LERVESRKER AALLCSKLED SFATVFRQVS MNRFESAVHN QRRSGGELDP ERISQFWLDS QKQMFGDSVT LTGDYRIWWS YIPHFIHSPG YVYAYAFGEL LVLSLYRQYR QTGASFVPLF RDLLEAGGKA SPNELLSPFG IDLSDPSFWK RGLEVIEGML DEAEQYARS
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