Gene Sfum_0458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0458 
Symbol 
ID4460267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp551416 
End bp553095 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content59% 
IMG OID639701214 
Productmethylmalonyl-CoA mutase, large subunit 
Protein accessionYP_844593 
Protein GI116747906 
COG category[I] Lipid transport and metabolism 
COG ID[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit 
TIGRFAM ID[TIGR00641] methylmalonyl-CoA mutase N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.484451 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.420898 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGACG AAAAAGCACT ACAGAAAATC AAAGCTGGCA AGGACAAGTG GGAACAGGGA 
ACTGTCGCCA AGACACTCGC CAAATCACCC GAGAGCAAGA AGGAATTCAC CACCATCTCA
GGCGCTCCCG TGGAACGGCT GTACACCCCT GCCGATGTCG CCGGGATCGA CTACGAGAAG
CACATCGGCT TCCCCGGCGA ATTTCCCTTC ACCCGCGGTG TCCAGCCGAC CATGTATCGG
GGCCGTTACT GGACCATGCG GCAGTACGCA GGGTTCGGCA GCGCCAAGGA CACCAACGCC
CGCTACCGTT ACCTGCTGCA GCAGGGCCAG ACGGGTCTGA GCGTTGCTTT CCATCTGCCC
ACCCAGGCCG GATACGACAG CGACCATCCC CTGTCCATGG GTGAAGTCGG AAAGGTGGGC
GTGGCCATCG ACTCGATCGA GGATTTGAAG GTGCTCTTCA ACGGCATCCC CCTCGACAAG
GTGACCACCT CCATGACCAT CAATGCGGCC GCCACCGTGC TTCTCGGCAT GTACCTGGCC
ATCGCCGAAG AGCAGGGAGT GCCTTACGAC AAAGTGGGCG GAACCGTGCA GAACGACGTG
CTCAAGGAAA TCATCTGCCG CGGTCAGTAC ATTTATCCTC CCAAGCCCAC CATGCGGTTG
ACCGTCGACC TGATCGAGTT CGCCCAGAAG TTCGTGCCCC GCTGGAACTC CATCAGCATC
AGCGGCTACC ACATCAGGGA ATCCGGCTCG ACGGCCGCCC AGGAGATCGC GTTCACCCTC
GCGGACGGCA TCGCCTACGC GCAGGCGTGC ATGGATCGGG GCATTCCCGT CGATGCATTC
GCAGGACGTT TGAGCTTCTT CTTCAACGCT TTCACCAACG TGCTCGAGGA AGTGGCGAAG
TTCCGCGCGG CTCGCAGGTG CTGGGCGAAG ATCATGAAGG AGCGTTTCGG TGCAAAGGAT
CCGCGCAGCA TGATGTTGCG TTACCACGTG CAGACCGGCG GCGTGACGCT GACCGCTCAG
CAGCCGCTCA ACAACATCGT CCGTGTCGGC CTCCAGACCT ATGCCACCGC CCTCGGCGGA
GCACAGTCGC TGCACACCAA CTCGTACGAC GAAGCCCTGT GTCTGCCGAC CCAGCAGGCC
GTTACCGTGG CTCTGCGCAC GCAGCAGATC GTCGCCGAGG AAAGCGGTGC CACCGACACC
ATCGATCCTT TGGCCGGGTG CTACTATGTC GAGGCAATGA CGGACAAGAT CGAGGCGGAA
GTCCACGAGT ACATCAAGAA GATCGACGCC ATCGGCGGGA CCCTGTCCGC CATCGAGCAA
GGCTACATCC AGAAGGAAAT CCAGAACAGC TCCTACCGCT TCCAGAAAGA AATCGAGAAC
AACGAGCGGG TATACGTGGG CATCAACAAG TACACCATGG AAGAACCGCC TCCCGAGGGT
CTCTTGAAGG TGGATATGTC CGTTGGCGAA GTCGAAGCCG CCAAGCTCAA AAAACTCCGT
GCCACCAGAG ATCAGGCCAA GTGGAAAGCT GCGTTGGACA AGCTGAAGAA AGTCTCCCAG
ACAGACGAGA ACGTCATGCC GACCGTCATC GAGGCGGTGA AGGCCAAGGC CACCGTCGGA
GAAATCTGCG ACGTATGGCG GGAAGTTTTC GGCGAGTATC GTCCAAAAGA ATTCGTCTAA
 
Protein sequence
MFDEKALQKI KAGKDKWEQG TVAKTLAKSP ESKKEFTTIS GAPVERLYTP ADVAGIDYEK 
HIGFPGEFPF TRGVQPTMYR GRYWTMRQYA GFGSAKDTNA RYRYLLQQGQ TGLSVAFHLP
TQAGYDSDHP LSMGEVGKVG VAIDSIEDLK VLFNGIPLDK VTTSMTINAA ATVLLGMYLA
IAEEQGVPYD KVGGTVQNDV LKEIICRGQY IYPPKPTMRL TVDLIEFAQK FVPRWNSISI
SGYHIRESGS TAAQEIAFTL ADGIAYAQAC MDRGIPVDAF AGRLSFFFNA FTNVLEEVAK
FRAARRCWAK IMKERFGAKD PRSMMLRYHV QTGGVTLTAQ QPLNNIVRVG LQTYATALGG
AQSLHTNSYD EALCLPTQQA VTVALRTQQI VAEESGATDT IDPLAGCYYV EAMTDKIEAE
VHEYIKKIDA IGGTLSAIEQ GYIQKEIQNS SYRFQKEIEN NERVYVGINK YTMEEPPPEG
LLKVDMSVGE VEAAKLKKLR ATRDQAKWKA ALDKLKKVSQ TDENVMPTVI EAVKAKATVG
EICDVWREVF GEYRPKEFV