| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0424 |
|---|
| Symbol | |
|---|
| ID | 4460391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 514085 |
|---|
| End bp | 516019 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639701180 |
|---|
| Product | threonyl-tRNA synthetase |
|---|
| Protein accession | YP_844559 |
|---|
| Protein GI | 116747872 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000699319 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG AGATAAGTGT AACGCTGGCA GACGGTACAA CGAAATCCTT TCCCAGGGGC
GTTTCCGCCG GTGAGGTCCT GAAAGCTTCC GGAGGGCCGA ACGGTTGGGT GGCGGCCAAG
GTCAACGGTG TGCCCGTGGA CCTGATCGTC GGGATCGAGG AAGACGCCGC CGTTGAAGGA
ATACGGGCCG ATTCCGAGGT GGGGCTCGAG ATTCTTCGGC ACAGTGCCGC CCACGTCATG
GCCCAGGCCG TCAAGTCGCT GTTCCCCGAA GCCAGGGTGG CCATCGGGCC GGCCATCGAC
AACGGGTTCT ATTACGATTT CGAGGTGGAA CGGCCGTTCA CGCAGGACGA TCTGGACAGG
ATCGAGGCGA AGATGAAGGA GCTCGTCGGG GCGAAATTGA AATTCGAACG GAAAGTGCTG
CCTCGCGACG AAGCCATCGA CTTCTTCACG CGCCGGGGAG AAGGATACAA GGTCGAGCTG
TTGCAGGGAT TTTCGGATCC GACGGTCTCT TTTTACACGC AGGGCGATTT CGTGGATCTG
TGCCGCGGAC CTCATGTGCC CCACAGCGGG TACGTCAGGG CGTTCAAGCT GACCAGCGTG
GCCGGGGCCT ACTGGCGGGG CGACGAGCAC AACGCCATGC TGCAGAGGAT TTACGGCACG
GCGTTTGCCG ATCGCGACGC GCTCAAGAAA TACCTGCACT TTCTGGAAGA AGCTCAAAAG
CGGGACCACC GGCGTCTGGG CCGGGAGTTG GATCTCTTCA GCTTCAGCGA CGAGGTCGGC
GCGGGAATGG TCATCTACCA TCCCAGGGGA GCGTTGCTGC GGCACATCCT GGAGGCCTTC
GAAAAACGGG AGCACCTGCG CAGGGGGTAT CATATCGTTA TGGGGCCGAC CCTGCTCAAG
ACGGAGCTGT GGAAACGGTC GGGCCATTTC GAGCACTACC GGGAGAACAT GTACTTCACC
GAGATCGAGG AGCAGTCCTA CGGCATCAAG CCCATGAACT GCCTTGCCCA TATGCTTATC
TACAAGTCCC GGCTGCGAAG CTACCGGGAT CTGCCTCTGC GCTATTTCGA GCTCGGCACC
GTGCACCGCC ATGAGCGGTC GGGCGTGCTG CACGGTCTGA CGCGCGTAAG GCAGTTTACA
CAGGACGACG CGCATATCCT CTGCACGCCG GAGCAGTTGC ACGGTGAAAT TCAAAGCATT
ATCGACTTTG TGATTGAGGT GATGGGCATT TTCGGGTTTA ATCATGAAAT GGAAATCAGC
ACCCGCCCGG CAAAATCCAT CGGTTCGGAT GAAGACTGGG AACGCGCCAC GAGCGCCCTT
ATCGACGCCT TGGAAGACAA GGGGATTCCG TACCAGGTGT GCGAAGGCGA AGGGGCGTTC
TACGGGCCCA AGATTGACGT AAAATTGAGA GATGCGTTGG ATCGCAAATG GCAATGCGCC
ACGATCCAGT GCGATTTCAC GTTGCCGGAC AGATTCGACC TCACGTATGT CGGCGTCGAT
GGGAACCGGC ACCGGCCGGT GATGGTGCAT CGTGTGGTTT TGGGGTCCCT GGAGCGGTTC
ATAGGGGTCC TGGTCGAGCA TTTTGCGGGA GCGTTTCCGA CGTGGCTCGC CCCCGTTCAG
GCCATTGTGG TGACCGTGAC CGACGGGCAG ATCGAATTCG CCCGCAACAT GTACGACCGG
CTGCGGGAAG CGGGTGTGCG CGTCGAACTG GACGACCGCA ACGAGAAGCT CGGTTACAAG
ATTCGCGAGG CGCAAATGCA GAAGGTCCCA TACATGCTGG TGATCGGAGA CCGGGAGGTT
GCCGCGGGCG GCGTAGCGCC GCGCCGGCGC GATGGGACTC AACTGGAACT GATTGCCCCC
GAAGCCTTTG CGGCGATGAT CCAGAAGGAA TGTCTGGAGG CCACCAAGGG ACGGGTGGGG
CTGGGAATCG TATAG
|
|---|
| Protein sequence | MSAEISVTLA DGTTKSFPRG VSAGEVLKAS GGPNGWVAAK VNGVPVDLIV GIEEDAAVEG
IRADSEVGLE ILRHSAAHVM AQAVKSLFPE ARVAIGPAID NGFYYDFEVE RPFTQDDLDR
IEAKMKELVG AKLKFERKVL PRDEAIDFFT RRGEGYKVEL LQGFSDPTVS FYTQGDFVDL
CRGPHVPHSG YVRAFKLTSV AGAYWRGDEH NAMLQRIYGT AFADRDALKK YLHFLEEAQK
RDHRRLGREL DLFSFSDEVG AGMVIYHPRG ALLRHILEAF EKREHLRRGY HIVMGPTLLK
TELWKRSGHF EHYRENMYFT EIEEQSYGIK PMNCLAHMLI YKSRLRSYRD LPLRYFELGT
VHRHERSGVL HGLTRVRQFT QDDAHILCTP EQLHGEIQSI IDFVIEVMGI FGFNHEMEIS
TRPAKSIGSD EDWERATSAL IDALEDKGIP YQVCEGEGAF YGPKIDVKLR DALDRKWQCA
TIQCDFTLPD RFDLTYVGVD GNRHRPVMVH RVVLGSLERF IGVLVEHFAG AFPTWLAPVQ
AIVVTVTDGQ IEFARNMYDR LREAGVRVEL DDRNEKLGYK IREAQMQKVP YMLVIGDREV
AAGGVAPRRR DGTQLELIAP EAFAAMIQKE CLEATKGRVG LGIV
|
|---|
| |