Gene Sfum_0414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0414 
Symbol 
ID4461016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp503385 
End bp504272 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content60% 
IMG OID639701169 
Product3'-5' exonuclease 
Protein accessionYP_844549 
Protein GI116747862 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCCAG TTGTCGTCAT CGAAAAGCCA TCCGAGCTCG ATGCCCTGGT GCGACAGCTT 
TCCACCGCCC GCCATCTGGC CGTCGATACC GAATCCAACA GTTTCTACGC CTACTTCGAC
CGGGTATGCC TCATCCAGAT TTCGAGCCCG GAGCGGGACT ACATCATCGA CCCGCTCTCC
CTCAAGGATT TGAGCGTGCT CGGACGACTT TTCGAAAATC CCCGGATCGA GAAGGTCCTC
CATGCCGCGT CCAACGACGT CCTCGGCTTG AGGCGCGACT TTCAGTTCCG ATTCAACGGG
CTTTTCGACA CGGCCATCGC CTGCAAGCTG CTCGGCTACA AGCAGCTCGG CCTGTCCAAG
ATCCTCGAAA CCCATTTCGG GGTCTCCCTG AACAAGCGAT GGCAGCGTTA TGACTGGGGG
AAGCGGCCGC TCGTCCCCGA CCAGCTCGAT TATGCGCGGT TGGACACCCA TTACCTGATT
GCGCTCCGGC ATATGCTCGC GGCGGACCTG CAGTCCCGGG AGCTCTGGGC GGAAGCCTGC
GAAGCTTTCG AAAAGGCCAG CGAGCAGCAG GTCCCGGAAA AGACGTTTCA TCCCAGGGGC
TTCCTCCAGA TCAACGGCGC CCGGTCGCTT GACGCCGCGG GGAAGAGCAT CCTGAAGGCG
CTCTACATGT TCCGGGAAAA AGAGGCTCGC AGGCGGGACC GGGCACCGTT TCGCATCATG
TCCAACGAGG CCTTGCTCCG CCTTGCCGAC GCTCGGCCCG ACAGCGTGGA TGAAATCTCT
CGGATCAAGG GGCTGCCCCG CAGTTTCCAC GACCCGAAGG CGGCGTCTTT TCTAATCGAG
ATCATCAGGC AAAACAACAA CTCGAACGAT ACCGAAGCCA GGGAATGA
 
Protein sequence
MNPVVVIEKP SELDALVRQL STARHLAVDT ESNSFYAYFD RVCLIQISSP ERDYIIDPLS 
LKDLSVLGRL FENPRIEKVL HAASNDVLGL RRDFQFRFNG LFDTAIACKL LGYKQLGLSK
ILETHFGVSL NKRWQRYDWG KRPLVPDQLD YARLDTHYLI ALRHMLAADL QSRELWAEAC
EAFEKASEQQ VPEKTFHPRG FLQINGARSL DAAGKSILKA LYMFREKEAR RRDRAPFRIM
SNEALLRLAD ARPDSVDEIS RIKGLPRSFH DPKAASFLIE IIRQNNNSND TEARE