Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0414 |
Symbol | |
ID | 4461016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 503385 |
End bp | 504272 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639701169 |
Product | 3'-5' exonuclease |
Protein accession | YP_844549 |
Protein GI | 116747862 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCAG TTGTCGTCAT CGAAAAGCCA TCCGAGCTCG ATGCCCTGGT GCGACAGCTT TCCACCGCCC GCCATCTGGC CGTCGATACC GAATCCAACA GTTTCTACGC CTACTTCGAC CGGGTATGCC TCATCCAGAT TTCGAGCCCG GAGCGGGACT ACATCATCGA CCCGCTCTCC CTCAAGGATT TGAGCGTGCT CGGACGACTT TTCGAAAATC CCCGGATCGA GAAGGTCCTC CATGCCGCGT CCAACGACGT CCTCGGCTTG AGGCGCGACT TTCAGTTCCG ATTCAACGGG CTTTTCGACA CGGCCATCGC CTGCAAGCTG CTCGGCTACA AGCAGCTCGG CCTGTCCAAG ATCCTCGAAA CCCATTTCGG GGTCTCCCTG AACAAGCGAT GGCAGCGTTA TGACTGGGGG AAGCGGCCGC TCGTCCCCGA CCAGCTCGAT TATGCGCGGT TGGACACCCA TTACCTGATT GCGCTCCGGC ATATGCTCGC GGCGGACCTG CAGTCCCGGG AGCTCTGGGC GGAAGCCTGC GAAGCTTTCG AAAAGGCCAG CGAGCAGCAG GTCCCGGAAA AGACGTTTCA TCCCAGGGGC TTCCTCCAGA TCAACGGCGC CCGGTCGCTT GACGCCGCGG GGAAGAGCAT CCTGAAGGCG CTCTACATGT TCCGGGAAAA AGAGGCTCGC AGGCGGGACC GGGCACCGTT TCGCATCATG TCCAACGAGG CCTTGCTCCG CCTTGCCGAC GCTCGGCCCG ACAGCGTGGA TGAAATCTCT CGGATCAAGG GGCTGCCCCG CAGTTTCCAC GACCCGAAGG CGGCGTCTTT TCTAATCGAG ATCATCAGGC AAAACAACAA CTCGAACGAT ACCGAAGCCA GGGAATGA
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Protein sequence | MNPVVVIEKP SELDALVRQL STARHLAVDT ESNSFYAYFD RVCLIQISSP ERDYIIDPLS LKDLSVLGRL FENPRIEKVL HAASNDVLGL RRDFQFRFNG LFDTAIACKL LGYKQLGLSK ILETHFGVSL NKRWQRYDWG KRPLVPDQLD YARLDTHYLI ALRHMLAADL QSRELWAEAC EAFEKASEQQ VPEKTFHPRG FLQINGARSL DAAGKSILKA LYMFREKEAR RRDRAPFRIM SNEALLRLAD ARPDSVDEIS RIKGLPRSFH DPKAASFLIE IIRQNNNSND TEARE
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