Gene Sfum_0410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0410 
Symbol 
ID4461012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp492634 
End bp496077 
Gene Length3444 bp 
Protein Length1147 aa 
Translation table11 
GC content52% 
IMG OID639701165 
Producthypothetical protein 
Protein accessionYP_844545 
Protein GI116747858 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.301766 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAGC AACAGGCACG CAAACTCATC AAGCAAACAT TTGAGCAGCC GTTTGAGAAG 
ACGCGCTTTA CCACGCTGAT CAAAAATCTT CTCAATCGCT GTGAGGAAGC GCCACTTTCC
TACAAGGGGC AGTACATCCC GGATGCCTAC AAGCCTTATA TCAGTGCCCT GGATCGTATC
GGCAAATTCC ACGACGGGGA GCACGCCGTT GATATTCTGG TGATCAAGCT CAAGAAGGAA
ACCTCGCTGG AACGCGCCCG CACCATGCAG CGGAATTTCG TCGCCTGGTA CCTCAACGGC
AGCCGCGGCG ACAAGCTGAA AGACGCGGCA CTGGTCGCGT TCGTCTCCCC GGAGGAAACC
GACTGGCGTT TTTCGCTGGT GAAGATGGAT TACCGGTTTG AACAGACGAA AACCGGCAAG
ATGAAGGTGA AGGAAGAGTT CACCCCGGCC CGGCGCTGGT CCTTCCTGGT GGGCACCAAC
GAACAAAGCC ATACCGCCCA GAGTCGACTG ATCAATCTAC TGGCCAATGA CGAACAGACA
CCGACGCTGG CCGAGTTGGA AGAAGCCTTC AACATCGAAA CCGTCACTAC GGAGTTCTTT
CTCAAATACC GCGACCTGTT CATCCGGACC AAGGAAGCGC TGGACCGGGT GGTGCGGGGC
GATCCCAGGA TCGAGGCGGA ATTCGAGGCC AAGCAGGTGA ACACGGTGGA CTTCGCCAAA
AAGCTCCTGG GACAGATTGT CTTCCTCTAC TTCCTGCAAA AGAAAGGCTG GTTCGGAGTG
GGCCGAGATG CCCCCTGGGG AACCGGTTCG AGACAATTCC TGCGCGAGCT CTTTGAGCAA
AAGCACGGCC GTTACGGTAA TTTCTTCGAC GATATCCTGG AACCTCTTTT TTATGAAGCG
CTGCGCAACG ACCGCAGCCA CGATGATGAT TACTACAGCC GGTTCAACTG CAAAATTCCG
TTCCTCAACG GTGGGCTGTT CGATCCCATT GACGATTACG ATTGGGTCCA CACCAACATC
AACCTGCCCG ACAGCCTCTT TTCCAACCAG AACCGGACCG CCGAAGGCGA CATCGGCGAT
GGAATCCTGG ACATTTTCGA TCGTTACAAT TTCACCGTCA AAGAAGATGA GCCGCTGGAA
AAAGAAGTCG CCATCGATCC GGAACTGTTG GGCAAAGCAT ACGAAAAGTT CAACGCCATT
CGGCCGGACA ACTTTGAAGA GTACAAACAG GTTTTAAGAA GCGGCAAGAA GGGGGATGAG
AACAAATTCA ACAAGCAGTT CGGCGTCTAC TACACGCCCC GCGAGATCGT CCACTACATG
TGCCGGCAGA GCCTGATCAA TTACCTGCAC ACCGAATTGG GCAAGGACAT AGTCACACAC
AAAAAGCTGT TTGAAAAACA GACCACGATG TTCGGGAATC AAGCGAAAAG GGGCCAACTG
GACTGCACCA TCGAGTACAA GCTGACGCCG CAGATTTCCA GGAAAGACAT CGAAACCCTG
ATCCACCTGG GCGAACAGGT CAGTGCCAAT GAGGCGCGGG TGGAAAACAA GGGCAAGGAG
ACCGTCACCT ATTCTTACAA GCTGCCGGAA AGCATCCGCA AGAACGCAGG GCCGATCGAC
CGGAAGCTGG CGGATATCAC GGTGTGTGAT CCGGCGGTGG GCTCCGGTGC TTTTCCCGTG
GGCATGATGA CGGAGATTGT TCGAACCCGA AACGTGCTGT CCACCTTTAT TCAGGAAGAC
AAGCCAACCC CGTATGACCT GAAGCGTCGC TGTATCGAGC ATTCCCTGTA CGGCGTGGAT
ATTGACGCCG GTGCCGTTGA GATTGCCAAG CTGCGGCTGT GGCTCTCGCT GATCGTCGAT
GAGGACGATA TCAAGAATAT CAAGCCGCTG CCCAATCTGG AATACAAGAT CGTCTGTGGA
GACTCGCTTC TCGGGTATCC CTACAAGCCA ATGGGACTTG ATGAAGTTGA AAAACTCAAA
GAGCAGTTCC TGGAGGAAGT CAATCCAAAA CGGAAGAAGG AATTGAGAAA CCGCATCGAT
GCAGCAATCT ATGGGTTGTT CAAGAATACC GAAAAGAGCC TCGGATACCA AGTCACCATG
GATTTCAGGA CTAACTTTTC CGAGGTGTTT CGAACAAAAG GTGGATTCGA TGTAGTGGTG
GCCAATCCCC CCTACGTACG ACAGGAGGCG ATTCGACACC TCAAGCCCAA GTTTAAAAAA
ATTTTCAAGG ATTTCTATTG TGGTACGGCG GATATCTATA CGTATTTCTA TAAATGCGGC
GTCGACCTGC TGAAATCCAA CGGGCATCTC TGCTTCATCG CTCCCAACAA GTTCATGCGG
GCCAGTTACG GAAAGAATAC CCGCACCCTG CTGACCACCC GGGCAACCCC GAGGCTGGTC
ATCGATTTTG GAGACCTGCC GATCTTTGAT GCCACAACCT ATCCGTCCAT CCTGCTGATT
GAAAAGCGGA AACCGGATGG GCGGGATAAA GCCGTTACGG CTACCTTTAC CGATGCGTCC
CAGCTTGCAA AGCTGGAAGA TAGCCTCTTG GACATCGCTT TCCTCATGCC TGTGAAAGCC
CTCAGCAAAG AAGGTTGGAA TTTGGAGCGC TCGGATGTCT TGTCATTAAT GGAGAAGCTG
AAGAAAATAG GCGTCCCATT GGGTGAGTAC ATCCAAGGAC GATTCTATCG GGGGGTACTG
ACAGGTTTGA ATAAAGCCTT TGTCATTGAC GCCGCCACGC GTGAAAGGTT GATTGCCGAA
GATCCGGCCA GTGCCGACGT TATCAAGCCT TGGCTCCGTG GCCGCGACAT TCGCAAGTGG
AAGGCGGAAT GGGCGGGATT GTATGTCATC AATATCGCGA GCAGTTCCAA CAAAACATGG
CCATGGTCGA ATGTAAAAAC AGAAGCTGAG GCTGTTCGCC AGTTCGAAGA GACGTATCCG
GCGATTTACC GGCATTTAGC ACCGTGGGAA AAAGAGTTGC AGAAGCGTGA CGATCAGGGG
AAATTCTGGT GGGAACTCAG GTCATGTGCC TACTATGAGG CATTTGAAGG AACCAAGATC
ATCTATCCTG ATATTTCACA AGCATCGAAG TTTAGCTGGG ATCAAAGCAA TTCATATCTT
GGCAACACGG TTTACATGAT CCCAACGGAC AAGCTCTGGC TTGTAGGGCT CCTGAACTCA
AAATTTATCT GGTGGTATTA CTCCAATATC ACTTCAACTA TTCGCGGCGG CTTTGTCCGT
TTTTTCAGCC AGTATATGGA AACTATCCCA ATTTCGCTAA TTTCCGATAG CCAAAAAACC
TCTATAATCG AACGCACTCG TGCCATTCTT GCTGCCCCTG GCAGCCCTGC GGTTCCCACG
CTCGAAGCGG AAATTGATCA AATTGTCTAT GTCCTTTACA ACCTGACTCC CGAGGAGATT
CGAATTGTGG AAGGGGTGAA TTAA
 
Protein sequence
MDKQQARKLI KQTFEQPFEK TRFTTLIKNL LNRCEEAPLS YKGQYIPDAY KPYISALDRI 
GKFHDGEHAV DILVIKLKKE TSLERARTMQ RNFVAWYLNG SRGDKLKDAA LVAFVSPEET
DWRFSLVKMD YRFEQTKTGK MKVKEEFTPA RRWSFLVGTN EQSHTAQSRL INLLANDEQT
PTLAELEEAF NIETVTTEFF LKYRDLFIRT KEALDRVVRG DPRIEAEFEA KQVNTVDFAK
KLLGQIVFLY FLQKKGWFGV GRDAPWGTGS RQFLRELFEQ KHGRYGNFFD DILEPLFYEA
LRNDRSHDDD YYSRFNCKIP FLNGGLFDPI DDYDWVHTNI NLPDSLFSNQ NRTAEGDIGD
GILDIFDRYN FTVKEDEPLE KEVAIDPELL GKAYEKFNAI RPDNFEEYKQ VLRSGKKGDE
NKFNKQFGVY YTPREIVHYM CRQSLINYLH TELGKDIVTH KKLFEKQTTM FGNQAKRGQL
DCTIEYKLTP QISRKDIETL IHLGEQVSAN EARVENKGKE TVTYSYKLPE SIRKNAGPID
RKLADITVCD PAVGSGAFPV GMMTEIVRTR NVLSTFIQED KPTPYDLKRR CIEHSLYGVD
IDAGAVEIAK LRLWLSLIVD EDDIKNIKPL PNLEYKIVCG DSLLGYPYKP MGLDEVEKLK
EQFLEEVNPK RKKELRNRID AAIYGLFKNT EKSLGYQVTM DFRTNFSEVF RTKGGFDVVV
ANPPYVRQEA IRHLKPKFKK IFKDFYCGTA DIYTYFYKCG VDLLKSNGHL CFIAPNKFMR
ASYGKNTRTL LTTRATPRLV IDFGDLPIFD ATTYPSILLI EKRKPDGRDK AVTATFTDAS
QLAKLEDSLL DIAFLMPVKA LSKEGWNLER SDVLSLMEKL KKIGVPLGEY IQGRFYRGVL
TGLNKAFVID AATRERLIAE DPASADVIKP WLRGRDIRKW KAEWAGLYVI NIASSSNKTW
PWSNVKTEAE AVRQFEETYP AIYRHLAPWE KELQKRDDQG KFWWELRSCA YYEAFEGTKI
IYPDISQASK FSWDQSNSYL GNTVYMIPTD KLWLVGLLNS KFIWWYYSNI TSTIRGGFVR
FFSQYMETIP ISLISDSQKT SIIERTRAIL AAPGSPAVPT LEAEIDQIVY VLYNLTPEEI
RIVEGVN