| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0342 |
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| Symbol | |
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| ID | 4460703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 402002 |
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| End bp | 403336 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639701097 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_844477 |
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| Protein GI | 116747790 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.501522 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATC GTGCCTTTGA CAGAATCCTT GCCGACAAGA GGAACCTGGA ACACATTCTG
GACAACCTGA TGGAAGGGAT CATCTCGCAC GACAGGAACC GGCGGATCCT GTTCTTTAAT
CGCGCGGCGG AGAACATCAC CGGGTATGCG CGGGAAGAGG TGATCGGCAG GGACTGCCAC
GAGGTTTTCG GATCGCCTTT CTGCGGGCAG CGCTGCTCCT TTTGCGGTGA AAGCCCGGAC
CTCATCGATC ACAAGAGTTA CGTCGTCAAC ATCCTCACCC GCAAGGGCGA GCCCAGGCGG
ATCGAAATGT CCGTCACGGG CATGGTCGAC GAAGATGGAC GTTTCCTCGG AGTCCTGGCC
GCCTTCCGCG ATCTCACCGA TCTTTTCGGA ATGAAGCTGC GCCTGGGGGA AATCAACAGT
TTCGCGGGCA TCATCGGGAA GGATCACAAG ATGCTCCAGG TGTTCGACCA GATCCGCGAC
CTGGCCACCA ATGACTTCCC GGTGCACATT TCCGGTGAAA CGGGAACGGG CAAGGAACTG
GCGGCGGCAG CCATTCACAA CGAGAGCCAC CGGGGCGGGG GGCCGTTCGT TCCCGTCAAC
TGCGGCGCGC TGCCCGAAGG GCTGCTCGAG AGCGAATTGT TCGGACATGT CAAGGGCGCT
TTCACCGGCG CCATTCGCGA CAAGAAGGGA CGTTTCGAAC TGGCCCACGG CGGCAGCATT
TTCCTCGATG AGGTCTCGGA GCTTCCCAGG TTCATGCAGG TCAAGCTCCT GCGCGTGCTC
CAGGAAGGCA CTTTCACACG CGTCGGCGGG GAATCGACCA TCGTCGTGGA CGTAAGGGTC
ATCAGCGCGT CCAACCGTGA CCTGAAAAAG GAAGTGGAAT CCCACAACTT CCGTGAAGAC
CTGTATTATC GGCTCAACGT CGTGCCGATC CGCATACCGC CGTTGAGAGA ACGCAAGAAC
GACATCCCCC TGCTCGCTGC TCACTTTCTT GAACAGGCCG TGAAACGCGG ACAAAAATCG
GCCGTCCTTT CCGAAGACGC CCTGGCCGCC ATGATGGACT ATTCCTGGCC CGGAAACGTG
CGGGAACTTC AAAACGCCGT CTATTTCGCG TTGGTCAAAT CCAGGGGCTC GACCCTCCAC
GTCGACGACC TGCCGCTCGA ACTGGCGCGA ACCGCGCCGA TCTGCAAGCC CGGTCCCGCG
CGCAAACTCG ACCGGGACTC CGTTGCCGCC GCCCTCAAAC AGAGCGGGGG CAACAAAGCG
CGGGCAGCCA GGCTCCTCGG GGTGGGCCGT GCCACGCTCT ATCGTTTCCT GGACGATTTC
GAAAACGTCC CATGA
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| Protein sequence | MSDRAFDRIL ADKRNLEHIL DNLMEGIISH DRNRRILFFN RAAENITGYA REEVIGRDCH
EVFGSPFCGQ RCSFCGESPD LIDHKSYVVN ILTRKGEPRR IEMSVTGMVD EDGRFLGVLA
AFRDLTDLFG MKLRLGEINS FAGIIGKDHK MLQVFDQIRD LATNDFPVHI SGETGTGKEL
AAAAIHNESH RGGGPFVPVN CGALPEGLLE SELFGHVKGA FTGAIRDKKG RFELAHGGSI
FLDEVSELPR FMQVKLLRVL QEGTFTRVGG ESTIVVDVRV ISASNRDLKK EVESHNFRED
LYYRLNVVPI RIPPLRERKN DIPLLAAHFL EQAVKRGQKS AVLSEDALAA MMDYSWPGNV
RELQNAVYFA LVKSRGSTLH VDDLPLELAR TAPICKPGPA RKLDRDSVAA ALKQSGGNKA
RAARLLGVGR ATLYRFLDDF ENVP
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