Gene Sfum_0314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0314 
Symbol 
ID4461665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp376540 
End bp377733 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content57% 
IMG OID639701069 
Productextracellular ligand-binding receptor 
Protein accessionYP_844450 
Protein GI116747763 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.568066 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.496718 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCA TGGTGTCGGC TATTGTGACT TTGTCTTTTG CACTCGCGTT CCTGGTCCTG 
CCGGCTTTCG CTCAGGAAAC CGTCAAGGTG GGCATCATTC TGCCGGTCAC GGGAGAAAAG
GCGAAATTCG GCGAAATCGA GAAGAAGTCT TTCGAGATGG CCCTGGAGGA GATCAACGCA
GCGGGGGGCA TCAACGGGAA GAAGCTCGAA TTCCTGCTTG AAGACGACAC CGGACGCCCG
GATGTGGCTC GTTCGGCGGC CGAGAAGCTC ATCACCAAGG ACAAGGTGGT CATGCTCGGC
GGCGGATACG GGAGTTCCGA GACGTTTGCC ATTGCCGGCG TTGCGCAACA GAGCCGCATC
CCTTTCCTCG TCAACACGGG ATCGGACGAT AAGATCACGG AAAAGAAATG GGAATACATC
TTCCGCCTGA ACCCCCCCGT GAGTGAGTAT CCGAAGGGGC TCGAATCCTT CCTCACCGAG
GTGGTGAAAC CGAAGACGGC GGTCATTTTG TACGAAAACA CCAACTTCGG GTCCTCGGGG
TCCAAGGAGT TCAAGGCGAC CTGCGAACGG CTGGGCATCA AGGTGCTCAT GATGGAAGGC
TACGAACACG GCGGAGTGGA TTTCAAGCCC CTGCTGATCA AGGTCAAGCA GGCCAATCCG
GATCTCGTTT ACATGATTTC CTACCTCATG GACGCGTCGC TGCTCATGAG GCAATCCCTG
GAGCTTCGCG TCACGCCCAA GCTCTTCGTC GGGGGGGCGG CGGGTTTTAC GCTGCCCGAA
TTTCAGAAGA ATGCGGGCAA GGCCTCCGAC ATGGTCTACT CCGCGACCCT GTGGTACCAG
ACCCTGCCCT ACCCGGGAGC CAAGAAATAC TTCGACGATT TCAAGAAAAA ATTCGGGGTT
GATACGGAAT ATCACGGTGC CGAGGCCTAT GCCGCGGCTT TCGTGATCGC CGATGCACTG
AAACGGACCA AATCCATGGG TCCGGAAGAT GTCCGCCAGG CGCTGGCCGC CACCGACATG
ATGACGGTTT TCGGCCCCGT CAAGTTCATC GCTTACGACA CGATGACCAA CCAGAACAAA
CTGCCCACCT ACCTGGTGCA GTGGATCGAC GGGAAGCTCG AGCTGGTGTG GCCGAAGGAC
GTCGCCTCCA AACCATACGT GTATCCTATC GACTGGGAAA AGGTCTGGAA ATAG
 
Protein sequence
MKRMVSAIVT LSFALAFLVL PAFAQETVKV GIILPVTGEK AKFGEIEKKS FEMALEEINA 
AGGINGKKLE FLLEDDTGRP DVARSAAEKL ITKDKVVMLG GGYGSSETFA IAGVAQQSRI
PFLVNTGSDD KITEKKWEYI FRLNPPVSEY PKGLESFLTE VVKPKTAVIL YENTNFGSSG
SKEFKATCER LGIKVLMMEG YEHGGVDFKP LLIKVKQANP DLVYMISYLM DASLLMRQSL
ELRVTPKLFV GGAAGFTLPE FQKNAGKASD MVYSATLWYQ TLPYPGAKKY FDDFKKKFGV
DTEYHGAEAY AAAFVIADAL KRTKSMGPED VRQALAATDM MTVFGPVKFI AYDTMTNQNK
LPTYLVQWID GKLELVWPKD VASKPYVYPI DWEKVWK