Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0303 |
Symbol | |
ID | 4460905 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 364399 |
End bp | 366129 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639701058 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_844439 |
Protein GI | 116747752 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.535404 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCAGC AGATGGAGCA AAGTCAAATC AAAGCCTTCC TCGACGCCGC TCACGAAGGC GTGCTGGCGG TCGATGCCGA TGGCCGCGTC ACGCTCTTCA ATACCGCCGC CGAACGTCTG ACGGGGATAT CGGCGGATGT CGTTCTCGGG CATCACGTGC GGGATGTGAT CCCCAACACC CGGCTGCACA TCGTCCTCGA AACCGGGGAA GCCGAACTGG ATCAAATCCA GGACACCGGA ATGACCACCG TGATGACCAA CAGGGTGCCG GTGCGCAATG CCCGAGGCGA GATCGTCGGG GCAATGGCCA TTTTTCGGGA CATAAGCGAA ATAAAGCGCC TGGGATGCGA GATTGCCGAG CTCAAAGAAA CGCGCACCCT GTTGGAAGCC ATCGTCAACT CGACCCAGGA CGCCATATCC GTGGTGGATG AAAGAGGGAT GGGGCTTCTC ATCAATCCAG CCTACACCCG GCTGACCGGC ATGACGGAGC GGGAGGTCCT TCACCGGCCG GCCACGGTCG ATATCGCCGA GGGCGAGAGC ATGCACCTGC AAGTGTTGCG CACGCGCCAA CCGGTAAAGC ATGTTCCCAT GAAGGTGGGC GCGGCGCGAC GCGAAGTGCT TGTGGACGTT GCCCCCATTG TCGTAGACGG TGCTCTCAAG GGGAGCGTCG CGGTCATTCA CGACGTTTCC GAGCTGCGTT CCCTGACCGA GCAACTGGAC AGGGCCCATC GGCTGATCCG GCGCCTGGAC ACCAAGTACA CGTTCGAGGA TATTATAGCC GTAAGCCCGA TCATGCAAGA ACTGCTCGAA CAGGCCCGAA AGGCCGCGGC AACGCCCGCA ACGGTCCTTC TGTCCGGCGA AAGCGGCACG GGAAAGGAGC TCTTCGCCCA TGCCATCCAT CATTCGAGCG ATCGCGCCCA ACGGCCCTTC ATCTCGGTGA ACTGCGGCGC AATCCCCGAC ACGCTCCAGG AAAGCCAGCT TTTCGGTTAT ATCGAAGGGG CGTTCACCGG TGCCAAACGC GGCGGTCAGA AAGGCCATTT CCTCGAAGCC CAGGGGGGGA CGATTTTCCT CGATGAGATC GCTGAAAGCA ACCTGGCCGT TCAGACCAAG CTGCTGCGCG TGCTCCAGGA GAAGGAAATC GTCCCCGTGG GGGCCTCGCG CCCCGTCCCC GTCGACGTCC GGGTCATTAC GGCGACCAAT GTCGATCTGG CCTCCCTGGT CGAAAAAGGG CATTTCCGAT CCGACCTTTT CTACCGGCTG CACGTCCTGC CGATCCACAT CCCACCGCTG CGCGAACGGC GCGAAGATAT CCCGCCGCTG CTGAGTGTTC TGCTCAACAA GCTCAACCAG GAATACAGCC GCCACGTCGA AGGAATCTCC CCGGAGGCGC TGGAAATGTT CTGCTCCTAC CATTGGCCTG GAAACGTGCG GGAATTGGAA AACATGCTCG GACGCGCGCT CATCAACATG CAGCCCGGAG AAAAGACGGT GCGCGCCGAA CACCTGCCGC ACACCTTGTC GGCCTTTGCG CGGCCGGAGG CCAGGCGCGA TGAAGGCGCG GAGCCTTTGC GCGTCGGGAG GAGTCTGGCC GAGGCTCATG CCGTCTGGGA GAAAGCCCTC CTGGAGAAGG CTCTGGCCAT GACGAACGCC AACCGCACGC AGGTGGCCAG GCAGTTGAGG ATCTCCGTGC GGCAGCTATA CAACAAGCTC AAGCGTTACG GACTCGGGTG A
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Protein sequence | MEQQMEQSQI KAFLDAAHEG VLAVDADGRV TLFNTAAERL TGISADVVLG HHVRDVIPNT RLHIVLETGE AELDQIQDTG MTTVMTNRVP VRNARGEIVG AMAIFRDISE IKRLGCEIAE LKETRTLLEA IVNSTQDAIS VVDERGMGLL INPAYTRLTG MTEREVLHRP ATVDIAEGES MHLQVLRTRQ PVKHVPMKVG AARREVLVDV APIVVDGALK GSVAVIHDVS ELRSLTEQLD RAHRLIRRLD TKYTFEDIIA VSPIMQELLE QARKAAATPA TVLLSGESGT GKELFAHAIH HSSDRAQRPF ISVNCGAIPD TLQESQLFGY IEGAFTGAKR GGQKGHFLEA QGGTIFLDEI AESNLAVQTK LLRVLQEKEI VPVGASRPVP VDVRVITATN VDLASLVEKG HFRSDLFYRL HVLPIHIPPL RERREDIPPL LSVLLNKLNQ EYSRHVEGIS PEALEMFCSY HWPGNVRELE NMLGRALINM QPGEKTVRAE HLPHTLSAFA RPEARRDEGA EPLRVGRSLA EAHAVWEKAL LEKALAMTNA NRTQVARQLR ISVRQLYNKL KRYGLG
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