Gene Sfum_0294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0294 
Symbol 
ID4460896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp352631 
End bp355846 
Gene Length3216 bp 
Protein Length1071 aa 
Translation table11 
GC content59% 
IMG OID639701049 
Productmulti-sensor signal transduction histidine kinase 
Protein accessionYP_844430 
Protein GI116747743 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0591] Na+/proline symporter 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.565561 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTGACT CCGGCATAGT GCTCAGCGCG TTCTGCCTGT ACATGGCATG CCTGTTCCTG 
ATTGCCCTGT GGGTGGAGCG GAAATCGGCG GCAGGCAGAA GCCCTGCCAA CAACCCTTTC
GTCTATTCTC TATCCCTGGC GGTCTACTGC ACGGCCTGGA CATACTATGG AAGCGTGGGT
CAGGCCGCAA CTTCCGGGTT TCTCTTTCTG CCCATGTATC TGGGTCCGAC GATCGCCATC
ATGCTGTGGT GGTCCATTCT GCGGAGACTG GTTCATCTCA GGAACAGCCG TCGCATCACG
AGCATTGCGG ATTTCATCTC AGCCCGTTAC GGCAGGTCCC AGTCCGTTGC CGCCATGGTC
ACCCTTATCG CGCTGGTGGG CATCACACCC TACGTCGCGC TTCAGCTCAA GGCGATCATT
TCCACTTTCG AGATCATCAC CGCGGCCGAC GCATCCTCCT GGATCCGGGC GGATGTGGGT
CCCCTGGTCG TGGTGCTCAT GGTGGTCTTT ACGATCATCC TTGGCGTGAG GCGGCTGGAT
CCCACCGAAC GGCACGAGGG CATGATGATG GCCCTGGCGG TGGAATGTGT CATTAAATTG
CTGGCCCTCC TCACCGTCGG CATCTTTGTG ACTTACTTCA TGTATGACGG CTTCGGCGAC
ATCTTCAGGC GGTTCTCGGA GAGCCCTTTT CATCATGTCT TCGAACTGGG GAGGCACGAT
GCCGGTTCCT ACGTCACGTG GACGGGTTAT CTCGTCCTTT CCATGTCGGC GATTCTCTTT
CTCCCCAGGC AGTTTCACGT GGCGGTCGTG GAGAACCACG ACGAGAAACA CATCCTGACG
GCCATGTGGC TCCTGCCGCT CTACCTGCTG CTGGTCAGCA TGTTCGTTCT CCCCATCGCC
GCGGGAGGGC TGCTCGACGG CCGGCCGCCC GACCAGGCGG ACACCTTTGT TTTGCGCATC
CCTCTTCAGC ACGGCAAACC GTGGCTGTCG CTCCTGGTGT TCATCGGAGG TTTTTCCGCG
GCGGCGGGCA TGATCATGAT CACCTCGGTA ACTATGGCAA CCATGATCAC CAACCATCTG
CTGCTGCCCC TGGTGCAATG GATTCCCGGC CTGGCTTTCG TTAAGCGCCA TCTTTTGAAA
TGCCGGTGGG GCGCTGTGGC CGGTTTCATC ATCATCGGTT ACTGGTTCGA GGAGCGAATC
GGTGAATCCT ACATGCTGGT CAATATCGGC CTCATTTCGT TCGCCGCGGG GCTTCAGTTC
GCTCCGGCCA TTCTGGGCGG CCTCTTCTGG CGGGGTGGGA ACAAGACCGG CGCCATCCTC
GGCCTCGCCG GGGGATTCGC CGTCTGGAGC TACACGCTGC TCCTGCCGTC TTTCATCAAG
AGCGGCTGGA TTTCAAACGC TCTGCTCGAA AAGGGAGCGT GGGGAATCGA GCTTCTGAAA
CCGGAGGAGC TGTTCGGCCT GACGGGGTTG AACCCCTTGA GCCACGCCGT TCTCTGGACG
ATGTTCGTCA ATATCGGTCT CTATGTTGCC GGTTCCCTGT GTTCCAGGGA ACGCGATGAA
GAGCGGAGTC TTGCCGAGGA ATTCGTGGGG GTTCTGGGTA CGCCGGCTCC TCTGCGCCGC
GCCCGCCGCT GGGACGCTTA CATCGAGCTG GCTCCCAAGA GAAGCGAGAT CGAAAAGGTT
TTCGGCCAGT ATTTTGCCGA ACCGGAGGCG ACGGCCATGG TGGAGAAATG CCTTTTCCAG
ACGGGAATAC ATCAGGCCGC GCGGATTTCG ATCGTCCAGC TGGTCGAGCT GCATAACGAG
GTGGAGCGAT CCCTGGCCGG GGCCATCGGG TCGGCGGCCG CTCACAAGGC CTTGCAGCAG
GGGACCATTT TTACGCCCAG GGAAGCCCAG GAGCTTTCCG AGGTTTATGG CGAGATCCTC
GCCGACCTGA AGGTTTTGCC GAGCGAGCTG TCTGAGCGAA TCGACTATTA CCAGGAAAGG
GAAAGGCTCC TTCTCCAACA GGCCAGGGAG CTGGAAGAGA AGGTGAACGA GCTGCGAAAG
CAGATCCGGA AGCGCAAGCG GGCCCAGGCG GCACTCAGGG AGTCCGAGGA ACGCTACAGG
ACACTGGTGG AAAGCACCTC GGACGCCATT CTGATGGTGG ATAAGGACAG AATGATCGTT
TCCACCAATC AGGCGTTCCT GGACCTTTTC GGCTACGAGC GCGGGGAGCT GGAGGGGCAA
TCCATACGAG TGGTTCACCC CTCCGAAGAG AGTTATGTCG TTTTCGGGCA ACGAGCGCAC
CATGCCATCC GAACCGGAGC TCCCTTCCGG ACGGAATGGA ACCTCGTGCG CAAGGATGGA
ACCATACTCC CCATGGAAGG ATCGTACTCG GCGATCAGAG GACCGGATGG TTCGCCAACG
GCTTATGTCG CCGTCATCAG GGACATCACC GAAAGGAAGA AGGCCGAGGA AGAGCTGAAA
AATTATCGCG ATCGACTCGA GAATATGGTC AGGGAACGGA CCCTGCAACT CGAGGCCGCT
CAAAAGGCCC TGGTGCAGAG AGAAAAGCTC AAGACTCTCG GCGCCATCGC GGCGGAGGTG
GCCCACGAAA TACGCAATCC GCTCATGTCT TTGGGCGGGT TTGCCATGCG TCTCCAAAAG
AAATATCCTG AGAGCCCCGA GGTGGAAATC ATTCTGGAGG AATCCAGGCG ACTGGAGAAG
ATCCTGGACC GCATCAAGGA CTATCTCAGA CCCGTCGACA TCCGTTCCCG GGAATGCCCC
GTGAACACCG TGGCGGCGGA ATGCGTGGGG TTGCTCGCGC AGGACCTGGA ACGCGAACGG
GTGGTCTGGC AATTGGATCT CGCCCCGGAG CTCCCCCCTG CATTGGTGGA CCCCGATGTC
CTGGGCGAAG TCTTCGTTCA TGTGATCACG CATATCGCAA AGGTCATGGA TAAACAGGGA
CTTCTGACCA TAAGAACCTA CGAAAGCGAC CGCAACATCC AGATCGATTT CCGGTATCGC
CTCCCGGCGC ACAAGTCCGT CCAGGATCCC GAACGGCTTT TTCTGCCTTT TGAGGAAGGC
GATGCGACCG GCGGGGTGCC GCTGAGTTAC CGGCTGCTCA AGGGTATGGG CGGTCTTCTT
TTCGTTACCC AGGAAGAGCG CGACACGCTC TTTACCGTCT CCCTGCCCCG AGTCCCCGAA
TCAAGCGGCG ACACCAAACA AAGCATCGAC GAGTGA
 
Protein sequence
MLDSGIVLSA FCLYMACLFL IALWVERKSA AGRSPANNPF VYSLSLAVYC TAWTYYGSVG 
QAATSGFLFL PMYLGPTIAI MLWWSILRRL VHLRNSRRIT SIADFISARY GRSQSVAAMV
TLIALVGITP YVALQLKAII STFEIITAAD ASSWIRADVG PLVVVLMVVF TIILGVRRLD
PTERHEGMMM ALAVECVIKL LALLTVGIFV TYFMYDGFGD IFRRFSESPF HHVFELGRHD
AGSYVTWTGY LVLSMSAILF LPRQFHVAVV ENHDEKHILT AMWLLPLYLL LVSMFVLPIA
AGGLLDGRPP DQADTFVLRI PLQHGKPWLS LLVFIGGFSA AAGMIMITSV TMATMITNHL
LLPLVQWIPG LAFVKRHLLK CRWGAVAGFI IIGYWFEERI GESYMLVNIG LISFAAGLQF
APAILGGLFW RGGNKTGAIL GLAGGFAVWS YTLLLPSFIK SGWISNALLE KGAWGIELLK
PEELFGLTGL NPLSHAVLWT MFVNIGLYVA GSLCSRERDE ERSLAEEFVG VLGTPAPLRR
ARRWDAYIEL APKRSEIEKV FGQYFAEPEA TAMVEKCLFQ TGIHQAARIS IVQLVELHNE
VERSLAGAIG SAAAHKALQQ GTIFTPREAQ ELSEVYGEIL ADLKVLPSEL SERIDYYQER
ERLLLQQARE LEEKVNELRK QIRKRKRAQA ALRESEERYR TLVESTSDAI LMVDKDRMIV
STNQAFLDLF GYERGELEGQ SIRVVHPSEE SYVVFGQRAH HAIRTGAPFR TEWNLVRKDG
TILPMEGSYS AIRGPDGSPT AYVAVIRDIT ERKKAEEELK NYRDRLENMV RERTLQLEAA
QKALVQREKL KTLGAIAAEV AHEIRNPLMS LGGFAMRLQK KYPESPEVEI ILEESRRLEK
ILDRIKDYLR PVDIRSRECP VNTVAAECVG LLAQDLERER VVWQLDLAPE LPPALVDPDV
LGEVFVHVIT HIAKVMDKQG LLTIRTYESD RNIQIDFRYR LPAHKSVQDP ERLFLPFEEG
DATGGVPLSY RLLKGMGGLL FVTQEERDTL FTVSLPRVPE SSGDTKQSID E