Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0294 |
Symbol | |
ID | 4460896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 352631 |
End bp | 355846 |
Gene Length | 3216 bp |
Protein Length | 1071 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639701049 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_844430 |
Protein GI | 116747743 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.565561 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTTGACT CCGGCATAGT GCTCAGCGCG TTCTGCCTGT ACATGGCATG CCTGTTCCTG ATTGCCCTGT GGGTGGAGCG GAAATCGGCG GCAGGCAGAA GCCCTGCCAA CAACCCTTTC GTCTATTCTC TATCCCTGGC GGTCTACTGC ACGGCCTGGA CATACTATGG AAGCGTGGGT CAGGCCGCAA CTTCCGGGTT TCTCTTTCTG CCCATGTATC TGGGTCCGAC GATCGCCATC ATGCTGTGGT GGTCCATTCT GCGGAGACTG GTTCATCTCA GGAACAGCCG TCGCATCACG AGCATTGCGG ATTTCATCTC AGCCCGTTAC GGCAGGTCCC AGTCCGTTGC CGCCATGGTC ACCCTTATCG CGCTGGTGGG CATCACACCC TACGTCGCGC TTCAGCTCAA GGCGATCATT TCCACTTTCG AGATCATCAC CGCGGCCGAC GCATCCTCCT GGATCCGGGC GGATGTGGGT CCCCTGGTCG TGGTGCTCAT GGTGGTCTTT ACGATCATCC TTGGCGTGAG GCGGCTGGAT CCCACCGAAC GGCACGAGGG CATGATGATG GCCCTGGCGG TGGAATGTGT CATTAAATTG CTGGCCCTCC TCACCGTCGG CATCTTTGTG ACTTACTTCA TGTATGACGG CTTCGGCGAC ATCTTCAGGC GGTTCTCGGA GAGCCCTTTT CATCATGTCT TCGAACTGGG GAGGCACGAT GCCGGTTCCT ACGTCACGTG GACGGGTTAT CTCGTCCTTT CCATGTCGGC GATTCTCTTT CTCCCCAGGC AGTTTCACGT GGCGGTCGTG GAGAACCACG ACGAGAAACA CATCCTGACG GCCATGTGGC TCCTGCCGCT CTACCTGCTG CTGGTCAGCA TGTTCGTTCT CCCCATCGCC GCGGGAGGGC TGCTCGACGG CCGGCCGCCC GACCAGGCGG ACACCTTTGT TTTGCGCATC CCTCTTCAGC ACGGCAAACC GTGGCTGTCG CTCCTGGTGT TCATCGGAGG TTTTTCCGCG GCGGCGGGCA TGATCATGAT CACCTCGGTA ACTATGGCAA CCATGATCAC CAACCATCTG CTGCTGCCCC TGGTGCAATG GATTCCCGGC CTGGCTTTCG TTAAGCGCCA TCTTTTGAAA TGCCGGTGGG GCGCTGTGGC CGGTTTCATC ATCATCGGTT ACTGGTTCGA GGAGCGAATC GGTGAATCCT ACATGCTGGT CAATATCGGC CTCATTTCGT TCGCCGCGGG GCTTCAGTTC GCTCCGGCCA TTCTGGGCGG CCTCTTCTGG CGGGGTGGGA ACAAGACCGG CGCCATCCTC GGCCTCGCCG GGGGATTCGC CGTCTGGAGC TACACGCTGC TCCTGCCGTC TTTCATCAAG AGCGGCTGGA TTTCAAACGC TCTGCTCGAA AAGGGAGCGT GGGGAATCGA GCTTCTGAAA CCGGAGGAGC TGTTCGGCCT GACGGGGTTG AACCCCTTGA GCCACGCCGT TCTCTGGACG ATGTTCGTCA ATATCGGTCT CTATGTTGCC GGTTCCCTGT GTTCCAGGGA ACGCGATGAA GAGCGGAGTC TTGCCGAGGA ATTCGTGGGG GTTCTGGGTA CGCCGGCTCC TCTGCGCCGC GCCCGCCGCT GGGACGCTTA CATCGAGCTG GCTCCCAAGA GAAGCGAGAT CGAAAAGGTT TTCGGCCAGT ATTTTGCCGA ACCGGAGGCG ACGGCCATGG TGGAGAAATG CCTTTTCCAG ACGGGAATAC ATCAGGCCGC GCGGATTTCG ATCGTCCAGC TGGTCGAGCT GCATAACGAG GTGGAGCGAT CCCTGGCCGG GGCCATCGGG TCGGCGGCCG CTCACAAGGC CTTGCAGCAG GGGACCATTT TTACGCCCAG GGAAGCCCAG GAGCTTTCCG AGGTTTATGG CGAGATCCTC GCCGACCTGA AGGTTTTGCC GAGCGAGCTG TCTGAGCGAA TCGACTATTA CCAGGAAAGG GAAAGGCTCC TTCTCCAACA GGCCAGGGAG CTGGAAGAGA AGGTGAACGA GCTGCGAAAG CAGATCCGGA AGCGCAAGCG GGCCCAGGCG GCACTCAGGG AGTCCGAGGA ACGCTACAGG ACACTGGTGG AAAGCACCTC GGACGCCATT CTGATGGTGG ATAAGGACAG AATGATCGTT TCCACCAATC AGGCGTTCCT GGACCTTTTC GGCTACGAGC GCGGGGAGCT GGAGGGGCAA TCCATACGAG TGGTTCACCC CTCCGAAGAG AGTTATGTCG TTTTCGGGCA ACGAGCGCAC CATGCCATCC GAACCGGAGC TCCCTTCCGG ACGGAATGGA ACCTCGTGCG CAAGGATGGA ACCATACTCC CCATGGAAGG ATCGTACTCG GCGATCAGAG GACCGGATGG TTCGCCAACG GCTTATGTCG CCGTCATCAG GGACATCACC GAAAGGAAGA AGGCCGAGGA AGAGCTGAAA AATTATCGCG ATCGACTCGA GAATATGGTC AGGGAACGGA CCCTGCAACT CGAGGCCGCT CAAAAGGCCC TGGTGCAGAG AGAAAAGCTC AAGACTCTCG GCGCCATCGC GGCGGAGGTG GCCCACGAAA TACGCAATCC GCTCATGTCT TTGGGCGGGT TTGCCATGCG TCTCCAAAAG AAATATCCTG AGAGCCCCGA GGTGGAAATC ATTCTGGAGG AATCCAGGCG ACTGGAGAAG ATCCTGGACC GCATCAAGGA CTATCTCAGA CCCGTCGACA TCCGTTCCCG GGAATGCCCC GTGAACACCG TGGCGGCGGA ATGCGTGGGG TTGCTCGCGC AGGACCTGGA ACGCGAACGG GTGGTCTGGC AATTGGATCT CGCCCCGGAG CTCCCCCCTG CATTGGTGGA CCCCGATGTC CTGGGCGAAG TCTTCGTTCA TGTGATCACG CATATCGCAA AGGTCATGGA TAAACAGGGA CTTCTGACCA TAAGAACCTA CGAAAGCGAC CGCAACATCC AGATCGATTT CCGGTATCGC CTCCCGGCGC ACAAGTCCGT CCAGGATCCC GAACGGCTTT TTCTGCCTTT TGAGGAAGGC GATGCGACCG GCGGGGTGCC GCTGAGTTAC CGGCTGCTCA AGGGTATGGG CGGTCTTCTT TTCGTTACCC AGGAAGAGCG CGACACGCTC TTTACCGTCT CCCTGCCCCG AGTCCCCGAA TCAAGCGGCG ACACCAAACA AAGCATCGAC GAGTGA
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Protein sequence | MLDSGIVLSA FCLYMACLFL IALWVERKSA AGRSPANNPF VYSLSLAVYC TAWTYYGSVG QAATSGFLFL PMYLGPTIAI MLWWSILRRL VHLRNSRRIT SIADFISARY GRSQSVAAMV TLIALVGITP YVALQLKAII STFEIITAAD ASSWIRADVG PLVVVLMVVF TIILGVRRLD PTERHEGMMM ALAVECVIKL LALLTVGIFV TYFMYDGFGD IFRRFSESPF HHVFELGRHD AGSYVTWTGY LVLSMSAILF LPRQFHVAVV ENHDEKHILT AMWLLPLYLL LVSMFVLPIA AGGLLDGRPP DQADTFVLRI PLQHGKPWLS LLVFIGGFSA AAGMIMITSV TMATMITNHL LLPLVQWIPG LAFVKRHLLK CRWGAVAGFI IIGYWFEERI GESYMLVNIG LISFAAGLQF APAILGGLFW RGGNKTGAIL GLAGGFAVWS YTLLLPSFIK SGWISNALLE KGAWGIELLK PEELFGLTGL NPLSHAVLWT MFVNIGLYVA GSLCSRERDE ERSLAEEFVG VLGTPAPLRR ARRWDAYIEL APKRSEIEKV FGQYFAEPEA TAMVEKCLFQ TGIHQAARIS IVQLVELHNE VERSLAGAIG SAAAHKALQQ GTIFTPREAQ ELSEVYGEIL ADLKVLPSEL SERIDYYQER ERLLLQQARE LEEKVNELRK QIRKRKRAQA ALRESEERYR TLVESTSDAI LMVDKDRMIV STNQAFLDLF GYERGELEGQ SIRVVHPSEE SYVVFGQRAH HAIRTGAPFR TEWNLVRKDG TILPMEGSYS AIRGPDGSPT AYVAVIRDIT ERKKAEEELK NYRDRLENMV RERTLQLEAA QKALVQREKL KTLGAIAAEV AHEIRNPLMS LGGFAMRLQK KYPESPEVEI ILEESRRLEK ILDRIKDYLR PVDIRSRECP VNTVAAECVG LLAQDLERER VVWQLDLAPE LPPALVDPDV LGEVFVHVIT HIAKVMDKQG LLTIRTYESD RNIQIDFRYR LPAHKSVQDP ERLFLPFEEG DATGGVPLSY RLLKGMGGLL FVTQEERDTL FTVSLPRVPE SSGDTKQSID E
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