Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0258 |
Symbol | |
ID | 4461252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | - |
Start bp | 308166 |
End bp | 308858 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639701013 |
Product | deoxyribonuclease V |
Protein accession | YP_844394 |
Protein GI | 116747707 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1515] Deoxyinosine 3'endonuclease (endonuclease V) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.109742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACG GGATCAGACA TTCCTGGGAC CTGACACCTA GAGAAGCGAT CGCCCTGCAG CGGGAACTGG CCGGAAGAGT CGTCCTGCGG GCGCTTCCCC GGAATTTTCG CATCCTGGGA GCGTCCGACA TCGGGTATGT CAAGGCCGGC GAACGCCTCG CGGCGGTCAT GCTGACCTTC AGCTGGCCGG ACCTGCTGCC CCTCGAAGCG GTTCACGCGA TCTGCCCCGT ACGCTTCCCC TACATCCCCG GACTCCTTTC CTTCCGCGAA ATCCCCCCGT TGATCGAGGC CTTCGAGCAG CTCAAAAAAA GGCCCGACGT CCTCCTGTGC GACGGACAGG GGATTGCCCA TCCACGCAAG TTCGGACTGG CCGCCCACCT CGGCCTCTAC CTCGGTCTGC CCACCATCGG CTGCGCCAAG AAACGGTTGT GCGGAATACA CGCCTCGCCG CCGAACAAGA AGGGCTGTTC CGTGCCTCTT TATCTCGACC GGGAAGCGGT GGGCAGCGTC TATTGTTCCA GGGACAACGT GAAACCGATT TTCGTATCGC CGGGGCACCT GTGCGATCAG AAATCCGCCG AGCGGCTCGT TGCCCGTTGC CTCGGCAGAT ACCGAATCCC CGAACCGCTG CGCCAGGCGC ATCTCCTTGC CACCAAATTG CGGCTGGAAA TAAGTATTTC TTCCAACGGT TGA
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Protein sequence | MSDGIRHSWD LTPREAIALQ RELAGRVVLR ALPRNFRILG ASDIGYVKAG ERLAAVMLTF SWPDLLPLEA VHAICPVRFP YIPGLLSFRE IPPLIEAFEQ LKKRPDVLLC DGQGIAHPRK FGLAAHLGLY LGLPTIGCAK KRLCGIHASP PNKKGCSVPL YLDREAVGSV YCSRDNVKPI FVSPGHLCDQ KSAERLVARC LGRYRIPEPL RQAHLLATKL RLEISISSNG
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