Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfum_0231 |
Symbol | |
ID | 4461307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophobacter fumaroxidans MPOB |
Kingdom | Bacteria |
Replicon accession | NC_008554 |
Strand | + |
Start bp | 271546 |
End bp | 274056 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639700986 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_844367 |
Protein GI | 116747680 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0172365 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.333041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCAT GGGCCTTCCG GTTCATGCCG GTTTTGACGA AGCGGAGCTT CACCGATAAG GTTCAGACGT CCGTTGCCCT TTTCCGGACA ATGAAAAACG ACACGCCCGG CGGTCCGCAA TGGATTGCCC CCTCCCTGGA AGGAAACGCC GTGAAGGTTT CGATGGAATC GCCGGAAGAC GCAATGAGTG AATGCAGCAG CCTTCGGGAA CGGGTGAGGG AACTGGAGTC CGCGGAAAAT CCATTCCGGA CGGCACTGGA AGATCACGAT GAGCTGATTG TTCGTTTCCG GCCCGATTTC ACGCTCGTGT ATGCAAACCA GGCCTATTGC CGACATCTTG CCGATACCGA AGCGCCGTGC GTGGGAGGGA ATTTCCTGGA CTGCGTCAAT CCGGCCGACC ACGATCGGGT CAGGGAGGAA ATCGGTTCGC TGGTCCCGGA TGGTCCCGTC AAGACCGTCG AACACGGAGT GCTCCTCGGA GGCAGAGAGG TTCGTTTATC CCGATGGGTC TATCGCGCCA TGATCGGTGA ACGGACCGAC GTGATCGAAT ACCTCGGCAT GAGTTGTGTC CAGGGAGAAC GGATAGCCCA CCCCGGGCCA TGGAACGAAT ACCGCTTTCT TGCGGAGAAG ACCGGCAACG CGGCGTATCG GCTCAGATGC GATTCCCGGA CCTACGATCA CCTCGGTCCC GCCATTACGA GGCTTACCGG GTACCCGTTG GACGAGTTCG ACGTATCGAA GTTTTCCGAG CTGATCGAGA AGATTGAAAT TCCGGGGGAA GAGGACGTCA CGCCGGATAC CCTGATCGGG TTTCGGAAGG AAGGAAGAAC GGGAGAATAC AGGGCCGATT ACCTGATCCG GACCCGACTG GGGGAACGCA AATGGGTGAG GGATCATTCC TTCCCCTGGT ACGACGAGTC GGGAGGCCTT GTGGGCTCCG TCGGCATCCT ATCGGACGTG ACGGAATGCA AGCGGGCGGA GGAGGCGTTG CAGGAAAGCG AGGAACGGTT CAGAAACATG GCCGGCCTCT CTCCGTTCCC TATTGCCATC GTCGACCGGA ATGGAAAGAT CATTTACCTC AACCAGAGGT TCGTCGATCT GTTCGGGTAC ACTGCAAGCG ACATCCCGAC GCTGTGGGAC TGGTTCAACC AGGCTTGTCC GGACCCCGGG GAAAGCCGGA CGATCATCGA AAGGATACGG TCGGACCTGC AAGCCGCATC GAAATACGAG GTCATCAGCC ACGAGCACAG GGTTCGGTGC AAGGATGGTT CGAGCCGGGA AATCCGATTC CGCCTGGTGT CCATGGAAAA CGGCGATAAG TTCGTCACCT GCGAAGACCT GACCGAGCAT ATGAAGATCC AGGAGGAACG CATCAAGGCC AGCAAGCTGG AATCCATCGG CGTTCTTGCG GGTGGTATTG CACATGATTT CAATAATATC CTGACAGCCA TCATCGGCAA TATTTCACTG GCAAAATTGT ACGGCGGGCA GGGCGGCAGG GTCTCCGAGA AGTTGACGGA GGCCGAGCGG GCATGCATGC GCGCGAAGAA CCTCACGCAG CAGTTGCTGA CCTTCTCGAA AGGCGGGGAG CCCATAAAAA AGGTAATCGA CGTCTCCGAT TTCCTCCATG AAGCGGTGCA TTTTGTCCTG ACCGGCTCGA ATGTCCGGAG CGTCTTCTTT CTTCCCGACG ACCTTTGGCC CGTTCAGTGC GATGAAGGCC AGATGGGGCA GGTGATCAAC AACCTGATCA TCAATGCCAA GCAGGCCATG CCTGACGGAG GTACAATCGA GATATCCGCC GAGAACGTCA TCCTCAACGC CGGGGATCAG GCTCTGCCGC TCAAGCCGGG CCGATACTTG CGGATCGGAG TGAAAGATTA CGGGCATGGG ATACCGGAAG AGGCACTGAC GCGCATTTTC GATCCCTACT TCACGACCAA GCTCAAGGGA AGCGGTCTTG GGCTTGCCAC TGCCTATTCC ATCATCAAGA AGCACGAGGG ATACATCCAG GTCGAGTCGC GAGTCGGAGA AGGGGCCGCA TTTCACATCT ATCTGCCTGT GGCGGGATGG TCTCTGCGGG AGCACGACAA AATGGGCGAC GACACACTTC GCGGACGGGG CCGGGTCCTC GTCATGGATG ATGAGGACAT CATTTTGAAC TGCACCTACG ATCTTCTGAG ATACCTGGGG TATGAAGTCG AGCTCGCCCG GGACGGGGCC GAAGCGGTGG AGTTGTACCA GGAAGCCGTG GGGCTGTCGC GTCCCTTCGA TGCCGTTATC ATGGACTTGA CCGTTCCCGG GGGGGTGGGC GGAGTCGAGG CGATGCAAAG GCTTCGCGAA ATCGACCCCA AGGTGAACGC CATCGTTTCG AGCGGCTACT CCAACGATCC CATCATGTCT CAGTACCGTG AATACGGTTT TCGGGGGGTG ATCACCAAGC CGTACAAGTT GGAACAGATC GGGGAACTGC TCAAAACAAT CGTCCGGCGC AAGTGGGACG CGGTCGAGTA A
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Protein sequence | MPAWAFRFMP VLTKRSFTDK VQTSVALFRT MKNDTPGGPQ WIAPSLEGNA VKVSMESPED AMSECSSLRE RVRELESAEN PFRTALEDHD ELIVRFRPDF TLVYANQAYC RHLADTEAPC VGGNFLDCVN PADHDRVREE IGSLVPDGPV KTVEHGVLLG GREVRLSRWV YRAMIGERTD VIEYLGMSCV QGERIAHPGP WNEYRFLAEK TGNAAYRLRC DSRTYDHLGP AITRLTGYPL DEFDVSKFSE LIEKIEIPGE EDVTPDTLIG FRKEGRTGEY RADYLIRTRL GERKWVRDHS FPWYDESGGL VGSVGILSDV TECKRAEEAL QESEERFRNM AGLSPFPIAI VDRNGKIIYL NQRFVDLFGY TASDIPTLWD WFNQACPDPG ESRTIIERIR SDLQAASKYE VISHEHRVRC KDGSSREIRF RLVSMENGDK FVTCEDLTEH MKIQEERIKA SKLESIGVLA GGIAHDFNNI LTAIIGNISL AKLYGGQGGR VSEKLTEAER ACMRAKNLTQ QLLTFSKGGE PIKKVIDVSD FLHEAVHFVL TGSNVRSVFF LPDDLWPVQC DEGQMGQVIN NLIINAKQAM PDGGTIEISA ENVILNAGDQ ALPLKPGRYL RIGVKDYGHG IPEEALTRIF DPYFTTKLKG SGLGLATAYS IIKKHEGYIQ VESRVGEGAA FHIYLPVAGW SLREHDKMGD DTLRGRGRVL VMDDEDIILN CTYDLLRYLG YEVELARDGA EAVELYQEAV GLSRPFDAVI MDLTVPGGVG GVEAMQRLRE IDPKVNAIVS SGYSNDPIMS QYREYGFRGV ITKPYKLEQI GELLKTIVRR KWDAVE
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