| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0213 |
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| Symbol | |
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| ID | 4461476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 249092 |
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| End bp | 251395 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639700967 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_844349 |
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| Protein GI | 116747662 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00304522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.312261 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAGT CATTATTGAT TGTCGAATCC CCGACAAAAG CGAAGACACT TGGGAGATAC
CTTGGAAAAG ATTTCATTGT AAAAGCCTCT GTGGGGCATG TGAAGGATCT TCCCAAGAAC
AGGCTCGGAA TCAATCTGGA AAAGGATTTC CAGCCGGAAT ACCAGGTAAT ACGCGGCAAG
AAGAAGGTCA TCAGCGAACT GCACGAGGCC GCCGCAAAGT CGGGAGCGAT CTTTCTCGGT
CCGGACCCCG ACCGCGAGGG TGAGGCCATT GCGTGGCATA TCGCGGAAGA AATCGGTGCC
ACGGACAAGC CCGTATACCG GGTGCTTTTC TACGAGCTGA CCCGGAAAGC GATACAGGAA
GCTCTTGCCA AGCCCGACAG GCTGAACCGG GAGCTCTACG AAGCCCAGCA GGCCAGGCGC
ATTCTGGACC GCCTGGTAGG ATATATGATT TCCCCGATCC TGTGGCAGAA AGTGAAGCGA
GGGTTGAGCG CCGGGAGGGT GCAGTCGGTG GCCCTTCGGT TGATCTGCGC GCGGGAAAAG
GAGATCCGGG ATTTCGATTC CAGGGAGTAC TGGACCATAA CCGCTTTGCT GGGGACGCAG
GCATCGGCCG ATGCGCCCGC GAAGAGCGCG TCCCGGCGGT TCAAGGCGGA GCTGTTCCGT
TGCGGGAAGA AGAAATGCAC GATTTCCACG GGAGAGGAAG CCCGCGAGCT GGTAGACCGG
CTGCGGCCGC TCGACTATCG GGTGAGCAAG GTCGAACGCA GGAAGAAGAA ACGCCATCCG
GCGCCTCCCT TCATCACCAG CACGCTGCAG CAGGAGGCGG CCAGGAAGCT GCATTTCTCT
GCCAGGCAGA CCATGAATGT GGCCCAGCGG CTCTACGAGG GGCTCGAACT GGGAAAGGAA
GGGGCCGTCG GCCTGATCAC GTACATGCGT ACCGACTCGA CACGGCTGTC CGCGGATGCC
GTTCAGGCGG TCCGGGACTA CATCGCCGGA CATTGGGACA AGGCCTATCT GCCGGCCAAG
CCCGCCGCGT ACAAGAGCAA AGCGGGCGCC CAGGGAGCGC ACGAGGCGAT CCGGCCCACG
GACGTGAATC GGACCCCGGA AACCGTTGCG GGCTTTCTGA CAAAAGAGCA GCTCAAGCTC
TATACGCTCA TCTGGAAACG TTTCACGGCA TGCCAGATGG CGCCTGCCGT TCTCGACCAG
ACCTCGGTGG ATATCGCGGC CGGGGACTAC GTCTTGCGTG CGTCCGGCTC GATCGTCGAG
TTTCCGGGTT TCATGACGCT GTATGTCGAG GGTCGGGAGA ACGGGGATGA GGATTCGGAG
ACCGAGGGGC TGCTGCCCGA GCTGAAGGAA GGGGAGGTCC TGAGGCTGGA AGACCTGAAG
GCAGATCAGC ATTTCACCCA GCCTCCGCCG CGGTATACCG AAGCCTCCCT GATCAAGGAG
CTCGAAGATC TCGGCATCGG GCGGCCCAGC ACTTATGCCA CGATCCTTTC GACGATCCTG
GATCGGGAAT ATGCCGTGGT CCGTAAGAAG AGCCTCTTCC CCAGCGAATT GGGATGGCTG
ATCGACGGCC TGATGGTGGA AAACTTCCCC AGCGTGGTGG ACGTCGATTT TACCGCCAAA
ATGGAAAAAA GCCTGGACGA AATCGAACAG GGGCAGCACC CTTATCGCAA CCTTTTGGCG
GAATTTTACG AGCAGTTTTC GAAGACGCTC GAATCCGCGC GGACCAACAT GGTGAACCTC
AAGGCGGTCG GACGCCGGAC CGATCTCCAG TGCCCGCAGT GCGGCCTGCC GCTGCACATC
CGGTGGAGTC GCAACGGGCC GTTCCTGGCC TGCAGCGGCT ATCCGGACTG CCGGTTCTCG
TCGGACTACA GGCGGGATGA AAAGGGAAAC ATCGAGCCGG TGGCCGAGGA ATCCACCGGC
GAGACGTGTG AGAAGTGCGG GCGACCGATG ATCCTGAAGA AGGGGCGTTT CGGGAACTTC
CTGGCTTGCA GCGGCTATCC GGCGTGCAAG AACACCAAGG CGCCCGGTAC GGGAATCCCG
TGTCCGCGCG AAGGATGTTC GGGGGAGTTG GTGGAACGGG TCAGCAGAGG CGGCCGGCAT
TTCTTCGGCT GCAGCAGATA TCCGGAATGC AAGACGGCCT TTTCGGGGCG GCCGGTCCCG
GGGAAATGCC CTTCATGCGG CACCGGGCCG TTGATTGAAA AGGGGGGCAA GGGAGGGAGT
GTGAAGCGGG TCTGCGTCAA TCCGTCCTGC AAGTATGTGG AAACCGTTCC CGCCGCGGCG
GACCGGAAGG CCGCAAAGGA TTGA
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| Protein sequence | MSKSLLIVES PTKAKTLGRY LGKDFIVKAS VGHVKDLPKN RLGINLEKDF QPEYQVIRGK
KKVISELHEA AAKSGAIFLG PDPDREGEAI AWHIAEEIGA TDKPVYRVLF YELTRKAIQE
ALAKPDRLNR ELYEAQQARR ILDRLVGYMI SPILWQKVKR GLSAGRVQSV ALRLICAREK
EIRDFDSREY WTITALLGTQ ASADAPAKSA SRRFKAELFR CGKKKCTIST GEEARELVDR
LRPLDYRVSK VERRKKKRHP APPFITSTLQ QEAARKLHFS ARQTMNVAQR LYEGLELGKE
GAVGLITYMR TDSTRLSADA VQAVRDYIAG HWDKAYLPAK PAAYKSKAGA QGAHEAIRPT
DVNRTPETVA GFLTKEQLKL YTLIWKRFTA CQMAPAVLDQ TSVDIAAGDY VLRASGSIVE
FPGFMTLYVE GRENGDEDSE TEGLLPELKE GEVLRLEDLK ADQHFTQPPP RYTEASLIKE
LEDLGIGRPS TYATILSTIL DREYAVVRKK SLFPSELGWL IDGLMVENFP SVVDVDFTAK
MEKSLDEIEQ GQHPYRNLLA EFYEQFSKTL ESARTNMVNL KAVGRRTDLQ CPQCGLPLHI
RWSRNGPFLA CSGYPDCRFS SDYRRDEKGN IEPVAEESTG ETCEKCGRPM ILKKGRFGNF
LACSGYPACK NTKAPGTGIP CPREGCSGEL VERVSRGGRH FFGCSRYPEC KTAFSGRPVP
GKCPSCGTGP LIEKGGKGGS VKRVCVNPSC KYVETVPAAA DRKAAKD
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