Gene Sfum_0156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0156 
Symbol 
ID4461437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp189953 
End bp190960 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content60% 
IMG OID639700911 
ProductDNA polymerase III, delta prime subunit 
Protein accessionYP_844293 
Protein GI116747606 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR00678] DNA polymerase III, delta' subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.986059 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTTCA AAGATATTCC CGGGCAGGAA CGAACGAAGC GGCTGCTGAA GCGGATGGCG 
CGAGCCGGAA CGCTTCCGCA TGCGGTTCTG TTCAGCGGCA TGGCGGGCGT GGGCAAGCTG
CGGGTTGCCC GGGAGCTCGC CAAGCTGGTC AACTGTCTCG AACCCCGGGA CGACGAGAGT
TGCGATCGCT GCATTTCATG CCGAAAAATC GATGAAGGGC ATCATCCGGA CCTTTTTGTC
ATCCGGAGCG AGGGCACGTT CATCAAACTG GACCGGATCC GGGAATTGCG GGAGCGCGTT
CGCTTCCGTC CCTTCGAAGG CAGATTTCGA GTCGTCATCA TCGAGAATGC CCAACACCTC
CATGACGAGT CCGGCAATGC CCTGCTCAAG GTGCTCGAGG AGCCGCCGCG CGCAAACCTT
TTTCTCCTTA CGGCCATTGA GCCCCAGATG CTCCTGCCGA CAATCGTGTC GCGGTGCAGT
CACTTGCGGC TGCAGCCGCT CGAAGACGAG GTGATCGCAG GGGAGCTGGC CGCTTCCCTG
AAGATCCCCG AGGCGCAGGC ACGGGAGCTG ACCCGGCTGT CGGGAGGCAG TCTCGACAGG
GCACAGTGGC TGGCACGGGA AGAACACCTG TCCCACTGGA AGGAGATTGT CGAGAATCTC
CGGAAATCCG AGCGGAGCGG CACGGCCGAC GTTCTCGCCA TGGCGGGGCG ATGGGCCCAA
CAGAAGGAAG ACTTGGAGCA GGATCTGGAA TGCGTTAAAT TGTGGGTGCG GGATCTCCTG
CTCTCCCGCG TGATCGACGG TTACAGGCAG GCTTTCGAGC CGGATGACCC GTGCGCCGTT
TGCGGTGGGG AGGTTTCTCC CGACAGTCTG TTGACCCTTT ACGACCGGGT CGAAGAGTCG
ATCGGTCGTT TGCGCGGGAA CGCCAACAAG CAGCTCGTCA TGGAAAGCAT CTGCCTGAAC
ATAAAGGATG TCTTATATGG AAAAGGTTGT TGGAATCCGC TTCCGTAA
 
Protein sequence
MSFKDIPGQE RTKRLLKRMA RAGTLPHAVL FSGMAGVGKL RVARELAKLV NCLEPRDDES 
CDRCISCRKI DEGHHPDLFV IRSEGTFIKL DRIRELRERV RFRPFEGRFR VVIIENAQHL
HDESGNALLK VLEEPPRANL FLLTAIEPQM LLPTIVSRCS HLRLQPLEDE VIAGELAASL
KIPEAQAREL TRLSGGSLDR AQWLAREEHL SHWKEIVENL RKSERSGTAD VLAMAGRWAQ
QKEDLEQDLE CVKLWVRDLL LSRVIDGYRQ AFEPDDPCAV CGGEVSPDSL LTLYDRVEES
IGRLRGNANK QLVMESICLN IKDVLYGKGC WNPLP