Gene Sfum_0140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0140 
Symbol 
ID4461507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp171182 
End bp172480 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content57% 
IMG OID639700895 
Producthypothetical protein 
Protein accessionYP_844277 
Protein GI116747590 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1232] Protoporphyrinogen oxidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.63632 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGGA TTTCAATAAT AGGCGCAGGA CCCATGGGAC TGGCCTGTGC GTATTATTTG 
CTCAAGCGAG GGTTCCACGT CGATGTCTAC GAGAAGGACG GAGTCGTTGG AGGCATGTCG
GCTTCCTTTG ACTTCGGAGG GCTCATGCTG GAACGCTATT ATCATTTCAT CTGCGGGCCC
GATGAGGATT ACCTCGGTCT TCTCGATGAA ATCGGCATGC TCGACCAGGT TCGCTGGGCG
GAAACGAGGA TGGGCTTCTA CTATCACGGG AAGCTTTACG AATGGGGCAA TCCGCGCGCT
CTGTTCCGGT TCCCGCACCT GGACGTCGGA ACCAAGCTTC GCTATGCCCT GCACGCGTTT
CATACGAGCA GGATCACGGA CTGGAGGAAG CTGGACCGGG AGGAGGCTTC GGGCTGGCTC
ACGAAATGGA TCGGCGGCTC AGGCTATGAA ATCCTGTGGG AAAGCCTGTT CAGAAAGAAG
TTTCATCGTT TTTCCAAGCC GTTGTCTGCC GCCTGGATCG GTTCGCGGAT CCGGAGGGTG
GCACGCTCCC GCAAAGGGCT CTTCAGCGAG GAAATGGGCT ATATCGAGAA AGGGACCGAG
TCTTTCCTTG GCCGCCTCAA AGGGCTCATT GAAGGAATGG GAGGGAACGT TTTTCTCAGC
GCCCCGGTGA GCCGGATCCT GCACCGCAAC GGAAGGGTGT CCGGTGTCAG CGTGGAAGGG
ATCGATCGGG ACTATGACGT GGTCGTTTCG ACCGTTCCGC TCCCGTATGT CCTGAGGATC
GCGGACGACC TTCCGGATTC CTATCTTTGC GCCGTGCGTG CCGTCAACAA CATAGGAGTG
CGATGCGTGG TTCTGAGGCT GAAGCATCCG CTCAGCGACT ACTTCTGGAT CAACGTCAAC
GACCCGGGTT TCGGCATACC CGGCCTGATC GAATATTCGA ACCTCAATCC GCTTCGCGAC
GGGATCGTTT ATGTTCCCCA CTATATGCCG ACCGAAAGCG AGGAATGGCG CATGGCGCCT
GAGGCCGTCA TCGCGCGGGC GTTCGTCTAT TGCCGCCGGA TCAATCCCGC CCTTGACGAC
GGATGGCTTG TCGATGCGAG ACTGTTCGAA TATGAATTCG CTCAGCCCAT ATGCACGCCG
GGTTTTTTTT CGAAACTGCC TCCTGTGTCG GGCATAATCG AAGGATTGTA CGTGGCGGAC
ACCACCCACT CATACCCTGA AGACCGGTCG ATCAACGAAA GCGTGCGGAT TGCCGGCATG
CTTGCCCGGA TGATAGCGAA TGAACGGCGT GGCCTTTAG
 
Protein sequence
MKRISIIGAG PMGLACAYYL LKRGFHVDVY EKDGVVGGMS ASFDFGGLML ERYYHFICGP 
DEDYLGLLDE IGMLDQVRWA ETRMGFYYHG KLYEWGNPRA LFRFPHLDVG TKLRYALHAF
HTSRITDWRK LDREEASGWL TKWIGGSGYE ILWESLFRKK FHRFSKPLSA AWIGSRIRRV
ARSRKGLFSE EMGYIEKGTE SFLGRLKGLI EGMGGNVFLS APVSRILHRN GRVSGVSVEG
IDRDYDVVVS TVPLPYVLRI ADDLPDSYLC AVRAVNNIGV RCVVLRLKHP LSDYFWINVN
DPGFGIPGLI EYSNLNPLRD GIVYVPHYMP TESEEWRMAP EAVIARAFVY CRRINPALDD
GWLVDARLFE YEFAQPICTP GFFSKLPPVS GIIEGLYVAD TTHSYPEDRS INESVRIAGM
LARMIANERR GL