| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0125 |
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| Symbol | |
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| ID | 4460435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 153112 |
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| End bp | 155550 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639700881 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_844263 |
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| Protein GI | 116747576 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.298389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA GACTGTTGGA ATGCGGCTCT CTCTTCGTAC TGGCGCTGAT GATCGTCTCC
GCGTACTGCA ATACATTCTT GTCGCCACCC TACATGGACG ATTATCATTC TTTCATCAAC
ACGGACCACG TCTACCTCAA GGATTTTTCC CCCGAGAGCC TGATTTCGCT TGCGAACACG
CCTTTCGGTT GGAAGCGCTG GGTGCCCATT CTGACTTTCG CCTTGAACCA CAAACTGGGG
GGCAGCAGCC TGGTTCTGTT TCACGCCACC AACCTTGCCA TTCACCTCCT GGTAACGCTC
AGCGTGGCAT TTCTTGCCTT CCAGGTCTTC AGGTTATCCA AGCACAGACA TGATGACGAC
ATGAGGGCCG GTTTTTGGAT GGCATTTTTT GTCGCGTGTC TTTGGGCGCT CAATCCCGTT
CAGACCAGTG CGGTGACTTA CCTGGTCCAG CGCATGGCAT CTTTGCAGGC TCTTTTCTAT
GTCATTAGCG TTGCGTGCTA TCTCAAGGGA CGCATCCTTC GCCAACCCCC GGTGAGCGCA
GAGAACTCCT CACGCCTGTT TTATCTGATC TCATTTCTGG CCGGAGTATG CTCCTTTTTC
TCGAAGGAAA ACGCCGTGAC GCTGCCAATC ATGCTGATCA TTTCGGAAAT CTGGTTTTTC
CAGCCGGATC TACTCCCGAA GTCCTTCCAG AGACTCAAAA GGTACGCCAT CAAGACGAAA
GTCCTTTTGT CCGCCTGCCT GCTTGCATGC GGCGCGTTCA GCATTTTCGT TTTTCTGCAT
ATTATCTCAC AATACGACCT CAGACATTTC ACAATGACCG AACGGCTATT GACCCAGGCG
CGCGTCGTCG TCTGGTACAT TTCCCTGTTG TTATGGCCTG CCCCTTCGCG GCTTTCCATG
GAACACGACG TTTTGGTCTC GACATCCCTT CTCTCACCCC CGACCACGCT GATCGCAATT
CTGTTTCTCG TTCTGCTGCT GTGGCTTGCT ATTCGCTTGC GTCATAGATT CCAGATTGTC
TGTTATGGAA TGGTTTGGTT TCTGCTCAAC CTGTCGGTGG AGTCAACCTT CGTCCCCCTG
GAACTGGTAT TCGAACACAG GCTTTACCTG CCTTCCGTCG GTTTCTTCAT CTCCATTATC
GCCGCAATCG AGCTGGCCTT TCGCCGCGTC GTGCCCAGGC TCTTGACCCG CGACCGTCTT
CTTGCGATGG GCAGCATTGT CATGATCCTG TCGTCGCTGC TCACCTTTGC CACTTTCGAG
AGAAACGAGG CATGGGAGAG TACGATGACT CTCCACAAGG ATGCTGCCGA GAAAGCGCCG
AACCACCCGC GCGCACTTGC CAACCTGGCC AACGCCTACT ACTTCGCCAA AGAATATGAC
AAGGCTGTCG AGGCAGGCGA GAAATCAATT GCGCTGGCCC GACCCAGGTT CGAATCTTAC
GCAGTTGCGA CAAATGCCAT ATTGATTTCA CTTATCAGGT CCGGCGACCT GCAGAAAGCG
ATAGAACGCA CCGAGGAACT GCTTCAATCC CGTCCCAGAG AGTTTGAAGC AGACGTCATG
GCAACGATCT ACACGAACCT TGGCGAAGCT TACCGCCGAC AAGAAAAACT GGACCGCGCG
CTTGAATCTG CGCTATCGGC ACTGTACTGG ACTCAAAGGC TTGGCAGCCC GACAATCGAC
AAGGTCAGGG TTGCGACCCT TATTACCTCC ATCCTTAAGG ACGCAAAGGC CAAACGCATC
AACCCGGATG AAGGCTGGGC GACCGCGCCG TTCGACATGC CCTCGCAAAC CTGGGCGGCG
AAAGTATTCT ATCGTTACGG GGACGCCGAT ATCGCCAAAA AACTCATCGC CGTCGCGCTC
GAGGAACACC CCGGCGATGC CGAAACCCTC AAGCTGTCGG AAGAAATCCG CACCGATGAA
CAATTGAGCG AGGAACAGAA AGGCAAGTGG AGCTTCACCG CAAAATATGT CCGTCACCCG
TTCTCCAGGT TCAATTTTTC CATGGCCATA GCATTTATTA TTCAAGAAAA ACAGATGCCC
ATGACGATAA TGAAATTGGG AGAGGCTTTC CTGGACTATG CCCTGGAGCT TCAACCGGAT
TCGACCGACG CGCACCTGCT GAAAGGCTGG TATTATTACC AGAGGGACGA CGCGCAAAAC
GCGGTGGCCG AGGCGAGACT GGCGCTGAAG CACGATCCGG AAAACGGGAA AGCATGGCTC
GGTTTGGGTT TCTTTCTGAT CAAAGCCGAG CAGAAGGAGG AGGCCGCCGC GGCTTTGCGC
AAGTCGTTGG CGCTCTACCC GCGGTATTCC AAGAGATTTG TTGTCCGCGA TATTGCGGAC
AATCTTTTGA AAAAGGAGTC CCTGGAGGAA GGTGTGGACA GCGGCCCGGG AACTGCGGCA
ATGACCGGGG AGGTCAGTCA GGGCGTTCGC GCGGATTAG
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| Protein sequence | MKKRLLECGS LFVLALMIVS AYCNTFLSPP YMDDYHSFIN TDHVYLKDFS PESLISLANT
PFGWKRWVPI LTFALNHKLG GSSLVLFHAT NLAIHLLVTL SVAFLAFQVF RLSKHRHDDD
MRAGFWMAFF VACLWALNPV QTSAVTYLVQ RMASLQALFY VISVACYLKG RILRQPPVSA
ENSSRLFYLI SFLAGVCSFF SKENAVTLPI MLIISEIWFF QPDLLPKSFQ RLKRYAIKTK
VLLSACLLAC GAFSIFVFLH IISQYDLRHF TMTERLLTQA RVVVWYISLL LWPAPSRLSM
EHDVLVSTSL LSPPTTLIAI LFLVLLLWLA IRLRHRFQIV CYGMVWFLLN LSVESTFVPL
ELVFEHRLYL PSVGFFISII AAIELAFRRV VPRLLTRDRL LAMGSIVMIL SSLLTFATFE
RNEAWESTMT LHKDAAEKAP NHPRALANLA NAYYFAKEYD KAVEAGEKSI ALARPRFESY
AVATNAILIS LIRSGDLQKA IERTEELLQS RPREFEADVM ATIYTNLGEA YRRQEKLDRA
LESALSALYW TQRLGSPTID KVRVATLITS ILKDAKAKRI NPDEGWATAP FDMPSQTWAA
KVFYRYGDAD IAKKLIAVAL EEHPGDAETL KLSEEIRTDE QLSEEQKGKW SFTAKYVRHP
FSRFNFSMAI AFIIQEKQMP MTIMKLGEAF LDYALELQPD STDAHLLKGW YYYQRDDAQN
AVAEARLALK HDPENGKAWL GLGFFLIKAE QKEEAAAALR KSLALYPRYS KRFVVRDIAD
NLLKKESLEE GVDSGPGTAA MTGEVSQGVR AD
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