| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_1728 |
|---|
| Symbol | rpl3p |
|---|
| ID | 4462921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 1872437 |
|---|
| End bp | 1873444 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639700747 |
|---|
| Product | 50S ribosomal protein L3P |
|---|
| Protein accession | YP_844134 |
|---|
| Protein GI | 116755016 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0087] Ribosomal protein L3 |
|---|
| TIGRFAM ID | [TIGR03626] archaeal ribosomal protein L3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGA TACACCGACC GAGGCGGGGT TCACTGGCCT TCAGTCCCAG GAAGAGGGCC
AAGAGCGAGG TTCCAAGGAT AAGATCCTGG GTCGCAGATG AGAGGGCCGG GATGGCCGGC
TTTGCCGGAT ACAAAGCTGG CATGACACAT GTCATAATGA TAGATGACAG GCCGAGAAGC
CTCACAGAGG GCATGGAGAT CAGCGTGCCT GTCACAGTGG TGGAGGTGCC GCCCATGAGC
GTAGCAGCGC TCAGGGTGTA TGAGCCCTAC AACGGCGGAA TTAGACCTGC TGGGGAGCTC
TGGGCTGAGA ACCTAAGCCA GGATCTAGAG AGAGCGATAA CGATTCCAAA GGCAAGAAGG
GGGGCATCCC TCGAGGATAT CGAGTCCAGG GTGGATGAGC TCTGCGAGAT CAGAGTTCTC
GCCCACACGA ATCCACGGCT GCTGACGGGC GTACCAAAGA AGGTGCCGGA TATCATGGAG
ATACCTGTCA CAGGGCGATC TGTGGAGGAG CAGCTCAAAG CAGCTGAGGG GCTTCTGGGC
AGCCAGGTGG CTGTGAGCAA CATCTTCAAC GTTGGCGAAT GGATTGATGT CTCTGCCGTG
ACAAAGGGAA AGGGAACCCA GGGGCCGGTG AAGCGCTGGG GAATAATGCT CCAGAAGAGG
AAGCACTCGC GCACCGGCAA GCTCAGACAT GTCGGAAACC TCGGGCCGTG GCACCCGGCA
AGGATAAGCT GGAGGGTTCC GCAGCTCGGC CAGACTGGGT ACCATCAGAG GACCGAGTTC
AACAAGAGAA TAATGGCAAT AGGCACTAAC GGCACGGACA TAACCCCCGA TGGTGGCTTT
GTCGGCTACG GTGTTGTGAG AAATGAGTAC ATGCTGATAA AGGGAAGCGT TCCGGGGCCT
GTGAAGAGGC TGGTCAGGAT GCGCAGGGCG ATCAGGCCAG GCGCTGCATT CGCGCCGAAG
GCGCCCCAGA TACTGTATGT CAGCAAGGAG TCCAAGCAGG GAGTCTGA
|
|---|
| Protein sequence | MATIHRPRRG SLAFSPRKRA KSEVPRIRSW VADERAGMAG FAGYKAGMTH VIMIDDRPRS
LTEGMEISVP VTVVEVPPMS VAALRVYEPY NGGIRPAGEL WAENLSQDLE RAITIPKARR
GASLEDIESR VDELCEIRVL AHTNPRLLTG VPKKVPDIME IPVTGRSVEE QLKAAEGLLG
SQVAVSNIFN VGEWIDVSAV TKGKGTQGPV KRWGIMLQKR KHSRTGKLRH VGNLGPWHPA
RISWRVPQLG QTGYHQRTEF NKRIMAIGTN GTDITPDGGF VGYGVVRNEY MLIKGSVPGP
VKRLVRMRRA IRPGAAFAPK APQILYVSKE SKQGV
|
|---|
| |