| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_1622 |
|---|
| Symbol | |
|---|
| ID | 4462199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | + |
|---|
| Start bp | 1764768 |
|---|
| End bp | 1765532 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639700641 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_844029 |
|---|
| Protein GI | 116754911 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCAT GGCTTGTGCC AGCTCACCTG CGAGCTGGAA TCGGACGACC GGAATCTATA
TTTGATCTCC GCTGCATGGA TCGCAGCATG AGAAAACTGA CAGTGTTACT CATGCTTCTC
ATGCTCTCTG ATTTATCCAT GGCTCAGAGC ACGCCCCAGG ATCTGGTTGA AGATGCAAAG
GCTCTTTTTG ATGCGAATGA TTATAACCAG GCCCTGAATC TGACGGAGAC AGCGCTCAGA
ATGGACAGCA GCCTCGAACA GGCCTGGCTT CTCAGGGGGA AGATACTCTA CGCGATGGGT
ATGCTGAGAG ATGCATACCA GAGCTTCGAT AGGGCCACGC AACTCGATCC ATCTGATGCA
GAGGCATGGA ACTACAAGGG AATCGTGCTG GCGGCGATGC AAAGATACAA TAATTCGTTG
CAGTGCTTCG AATCTGCGAT CCAGGCAGAC CCCATGAACT ACGAGGCCTG GAGCAACAAG
GGCAACACTC TCGTGAGCCT TGGGAGACTC GATGACGCCA TCTCAGCATT CGATAGATCT
ATTATCCTCA ATCAGACATA CGTAGGCGCC TGGATCGGCA AGGGTCTGGC CTTCTACTAC
CAGAAGAGGT ACCATGAGGC CCTGGCGATG TATGAGAGGG CTCTCCAGCT GGATCCTAAC
AACTCAATCG CCCTCTACAA CAAGGGTCTA GCGCTGCAAA AGCTCGGCAT GAACAAAGAG
GCTGAGGAGG CGTTCAGAGC TGCAGAGCAG AACCAGAAGA GATGA
|
|---|
| Protein sequence | MISWLVPAHL RAGIGRPESI FDLRCMDRSM RKLTVLLMLL MLSDLSMAQS TPQDLVEDAK
ALFDANDYNQ ALNLTETALR MDSSLEQAWL LRGKILYAMG MLRDAYQSFD RATQLDPSDA
EAWNYKGIVL AAMQRYNNSL QCFESAIQAD PMNYEAWSNK GNTLVSLGRL DDAISAFDRS
IILNQTYVGA WIGKGLAFYY QKRYHEALAM YERALQLDPN NSIALYNKGL ALQKLGMNKE
AEEAFRAAEQ NQKR
|
|---|
| |