| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_1364 |
|---|
| Symbol | |
|---|
| ID | 4462082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 1460515 |
|---|
| End bp | 1461213 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639700381 |
|---|
| Product | putative RNA-associated protein |
|---|
| Protein accession | YP_843779 |
|---|
| Protein GI | 116754661 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1500] Predicted exosome subunit |
|---|
| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.916259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAGC TCGATGAGGC TGTTCCCGCG AGGCTGAAGA GCCACGGCGC GGTCTTCGAG
GTTCTTGTGG ATCCCGATGG AGCCCTTGCG ATGCGCCGCG GGGAGGATGT CAGAATAGAG
GACATACTCG CGGTCGAGGA TGTCTTCGAG AACGCGAGCA GAGGGGATAG AAGCGCTGAG
GAGGACCTCC TCAAGGCTTT CGGCACAACA GATCCTCTCG CAATAGCGGA GATCATCATA
AAGAAGGGCG AGATCAGCCT CACGGCAGAG CAGCGCCGGA GGGTCATAGA GTCCAAGAAG
CGGCAGGTAA TCGAGCTGAT CGCGAGGAAT GCGATAAACC CGCAGACCAG GACACCACAT
CCTCCATCGA GGATCGAGCA GGCGATGGCA GAGGCAAAGG TTCACATCGA TCCGACGAAG
TCCCTCGAGG AGCTTGTCGC GATAACGATG AAGGCCATAC GCCCCATAAT CCCCATAAGG
TTCGAGGAGG TTGAGGTCGC GGTGAAGGTT CCTGCGAGCT ATGCTGCGAA GTCTTACGGC
GAGATATCAA CCTTCGGCAA GCTCGTGAGG GAGGCATGGC AGAACGACGG CTCCTGGATC
GGGGTTATCA GGATCCCTGC AGGGATGCAG ACGGAGTTCT ACTCTCTCGT GAACAGGCTC
ACAAAGGGTG ATGCGGAGAC CAAGCTGCTG AAGCACTGA
|
|---|
| Protein sequence | MVKLDEAVPA RLKSHGAVFE VLVDPDGALA MRRGEDVRIE DILAVEDVFE NASRGDRSAE
EDLLKAFGTT DPLAIAEIII KKGEISLTAE QRRRVIESKK RQVIELIARN AINPQTRTPH
PPSRIEQAMA EAKVHIDPTK SLEELVAITM KAIRPIIPIR FEEVEVAVKV PASYAAKSYG
EISTFGKLVR EAWQNDGSWI GVIRIPAGMQ TEFYSLVNRL TKGDAETKLL KH
|
|---|
| |