| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_0895 |
|---|
| Symbol | secD |
|---|
| ID | 4462359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 971180 |
|---|
| End bp | 972856 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639699914 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_843323 |
|---|
| Protein GI | 116754205 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.433485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTG CAGGCAGCAT TTCAAAGGAT CCAAGGGTTA TCATTTACAT CGCGGCCGTG
GTTCTTGCTC TGATCTTTGT ACTCACTCCG ATACCCGGAT ATGTGGGGAT GAACTCCGGT
CTCAAATACG GCCTGGACCT GGAAGGCGGC TCGTGGCTCC AGCTGGAGCT GGAGGGAGCG
ATCGTCCAGC TCGACGTTGA CCCAGTTAAT ATCCTGGAGA GGGAGTTCCA GGGCGCCTGG
GTCGTGGAGG ATGTCTCCAG GAGAGGCGAC AGTTACGTAA TAACGATAGA CGGAAAGGTT
CCGGAGACTC TGCCTGAGGA TCTCGGCTAT CCCGGATCGA GGGTTCTGGT GAGGGACAAC
ACTACAAGGA TCACGGTGCC CATCTCCCCT GAAGGCGTTG TTGTGAACTA CCTCAAAACG
CGCCTCGATT CTGATGTCAG GATCGTTGGG GTCGAGCCGG TGCGCTACGA GATAAGGTCG
AATGTGACAA GAGAGCAGCT TGACTCCATA CTCTCAGAGG TCAACGGTAG GGTTGCTCCG
GGTGAGGACA CATTCATCAG CGGTCTCACA CCCGAGACGG TCGATGAGAC CAAGGAGATC
CTCGACAAGA AGCTCAACCG TCTCGGGCTC AAGGATATCA AGGTGAGGGT AGTCGATAAC
AGGTTTATAA CAATAGATCT CGCTGGTGTC AACGTCTCAA CCGCCGAAGA GGTCGTCGGC
AAGCCTGGAA AGTTCGAGAT AAGGATCCAG GTTGGTCCGA ACGAGACCAG GCATGTCGTG
TACGGGGATG CTGTGGAGTC TGTGGATCTT CCGAGAGGAG ACAGGAGCGG GATGTGGGGG
GTGCCCTTCA CCCTGTCAGA GGAGGGCGCG CTCGCATTCC AGCGGATAGC CAAGGAGGTT
GGAGCCACAA GGAACCCGAA GGCGCATGAG GTCTCGATGT ACCTGGACAA GGATGAGATC
TTCAGCGCTC CTCTTGCTCC TGAGCTCGCA TCAGCTCTCG ATAAAGCACC GATGAGAAAT
CTGGTCGCAG AGGTAGGCAC GGGTGATGCA GGATCGAGGA AGGCGAAGGA GCTGTACATA
CATCTGAGAG AGGGCGCGCT GCCCGTGAAC GTCAAGATCA TAGGCTCCGG GCAGGTTGAT
GCTGCTTTGG GATCACAGTT CAAGTTCCAG GTGGCTCTTG CTGGGATCCT CGCGATACTT
GCTGTGGGTC TAATGGTCTT TTACAGATAC AGAGAGAGAA GGATAGTGCT GCCGATCGTC
TGCACATCAT TCAGCGAGGT CATCATGATG CTCGGCATAT GGTCGGCGGC CGGATGGCAG
CTCGATCTCG CGAGCATCGC CGGAATAATA ATGGTGATAG GTACAGGTGT TGACCACCTC
TTCATAATAA CAGATGAGCT TCTCCATGGA GAGAGGATCA CGGAGAGGAG CGAGCAGGAG
GCAAAGGGGG TTCTGCTGAC GGGCAAGATA TACCTCGCGA GGCTCTCCCG GGCGTTCTAC
ATCATCCTGG GGGCGGCTGT AACGACCATC GCTGCGATGA TACCCCTGCT CTGGATGGGG
TTCGGCGCGC TGATGGGCTT CGCCCTGATC ACCATAATCG GGGTTCTGAT AGGCGTGGGA
ATAGCAAGAC CTGCATACGG CAGGATTATC GGCTACATCC TAGGAGAGGC CGCGTAG
|
|---|
| Protein sequence | MSLAGSISKD PRVIIYIAAV VLALIFVLTP IPGYVGMNSG LKYGLDLEGG SWLQLELEGA
IVQLDVDPVN ILEREFQGAW VVEDVSRRGD SYVITIDGKV PETLPEDLGY PGSRVLVRDN
TTRITVPISP EGVVVNYLKT RLDSDVRIVG VEPVRYEIRS NVTREQLDSI LSEVNGRVAP
GEDTFISGLT PETVDETKEI LDKKLNRLGL KDIKVRVVDN RFITIDLAGV NVSTAEEVVG
KPGKFEIRIQ VGPNETRHVV YGDAVESVDL PRGDRSGMWG VPFTLSEEGA LAFQRIAKEV
GATRNPKAHE VSMYLDKDEI FSAPLAPELA SALDKAPMRN LVAEVGTGDA GSRKAKELYI
HLREGALPVN VKIIGSGQVD AALGSQFKFQ VALAGILAIL AVGLMVFYRY RERRIVLPIV
CTSFSEVIMM LGIWSAAGWQ LDLASIAGII MVIGTGVDHL FIITDELLHG ERITERSEQE
AKGVLLTGKI YLARLSRAFY IILGAAVTTI AAMIPLLWMG FGALMGFALI TIIGVLIGVG
IARPAYGRII GYILGEAA
|
|---|
| |