| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_0867 |
|---|
| Symbol | |
|---|
| ID | 4462331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 935662 |
|---|
| End bp | 937998 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639699886 |
|---|
| Product | HAE1 family efflux transporter |
|---|
| Protein accession | YP_843295 |
|---|
| Protein GI | 116754177 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | [TIGR00921] The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCCCA TAGACAGAAA AGAGCGGCTT GGTTGCTGGA TAGCAAAGAA TCCTGAGCTC
ATACTCATCG CTGCCGTCCT CCTCACACTT CTGTCGCTTC ATTACGCCCA GCAGATCGAG
ATGCATGGGA TGAGGACAGA GGACTTTGTG GATGAGGGAT CGATGCTGTA TCAGACCTAT
GAACACCTCT TCAAGGAGCG GTTTGCAACA GTCTCGATAA CTGTGGTGAT CGAGGGCGAT
GATGTAACAA CCCCTGAAGT CCTGAAGGCA ATGGACAGGC TTGCTGTGCA CATGGAGTCT
GTGCCCGATG TCATATCTGT TGAGGGAATA TCGCAGATCG TCAAGACCTC TGCTGAGAAT
GAACTCGGAA GGGGATGTAT TCCAGATGAG CAGGAGCTGA TAGATGCGCT TCTCCTTAAA
GGGGATCCCA GGCTGCTACA GAACATACTT CCTGACAGAA AGCATACAAT ACTCTCGATA
GAGCTCCCAC TCACGCTCAC AGATGAGGAG CGTGAGGAGG TCCTGCATGA GACAGAGAAG
GCTGTGGCCA TGGCCGAGTT TCCTCTAGGA GTGGGTGTTA TCGTCACAGG CGATGCTGCG
CTTGGAGTGG CGATAAAGAA GGAGATGTCG GAGAACTTTG GAAGCCTGCT TGGCGCATCT
GGGGTCCTAA TGATCCTGGC CCTTCTGCTC GTCTTCCGGC ACGTCAACTG GCCTCTCCTG
CCCCTTCCCG TCGTCTTTCT CGGCATAATC TGGACATTCG GGATAATGGG GCTGCTTAAA
ATCCCGATGA CGATGATATC GATGTCTGCC TTCCCGATAC TCATCGGCAT TGGCATCGAT
TATGCTATAC AATTCCATAA CAGGATCGAG GAGGAATTCT CCAAGGGAGG ATCTATTAAA
AAAGCGGTCG TTGAGACCGT GGCCCATACA GCGCCAGCGG TATTGATAGC GCTGGCTATA
ACAGCAGCTG GATTCTTCTC GCTATTCACA TCAAGCGTGC CCATGATCAG GACGTTCGGC
GTCCTTTGCC TTATAGGGCT GATAATGTGT TACCTCTCAG CCCTCTTTGT TGGGATAACC
GTGCTCTATG CCGCGGAAAC GAGTGGAAAC AACAGAAAGA ACAGGTCCCG CGGAAGGGAC
GGAGATGCAT CTGAGACAAC AGTTGCTGAG ACAGCCACTG GCAGAGCTGT GAGATCCGTA
GTCAGATTTT CGCTGAGGCG CGGCCCTATG ATACTCCTGC TAGCCCTCCT TCTGTCGCTT
GCAGGGGTTT ACTCCGACAC CTTGGTTCCT GTGGATACGG ATTTCAAGAA CTACATGCCG
CAGGATCTTC CTCCACTGGT CCAGTTCAGG CACCTGGTCG ATATATTCGG AGGGAGCGAT
GAGCTGAACA TAATAGTCCA GGGAGATGAC ATAACAGATC CGAAGATGCT GGAGTGGATG
AATGAGTTCG GCGAGTACAT CATAGAATCA AGACAGCAGG TGTACTTTGT CAACAGCGTT
GCCAGTTATA TGAGAATGCT GAACAACGGT TCCATACCTG AGGATAAGAC CGCCACAAGG
TATCTGCTTG GAATCATGCC TTCTTCGATG AGAGACAGGT ACATCGATGG GCATGATACA
GCTGTGATGG ACATCAACAT AGGCAACGCG CTGCGGGACC TTGGGGAAGA AGGGGTCGAC
CGCCTCATAA AAGAGATGTA CAAGGACGTC GAGTGGTTTG GCGTACCTCC TGGAACCAGC
GTTGTGATAA CGGGCAACCT CGTTGTGATG ACGACTGTGA TCGAGGCGCT CACGACTGGA
AGGACAGAGA TGACTTTATT CGGGCTAGTT GTGATATTCT TCATCCTGCT TCTGATATAC
AGAGATCTGA TAAAAGCGAC AATGCCGGTC TTGCCAATGC TGGTGGTCAT CGGATGGATG
GGCGGGGTGA TGTACATCAC AGGCATGAAG TACACACCAC TTACAGCCAC GCTCGGTGCC
CTGATCCTTG GCGTGGGTTC TGAGTACTCG ATACTGATGA TGGAGAGGTT TTATGAGGAG
CTCAAGAGAT GTAACGACAT CGATCAGGCC ATATCAAAGG CGTCGTCGAG CATAGGCTCT
GCGCTGGTTG CATCAGGCCT GACCACAGTC TTCGGCTTCG GTGCCCTCAT AACATCTCCA
TTTGTAATAA CAAACAACTT TGGCACAGTA ACTGTGCTGG CTGTGATATT CGCTCTTATC
ACAACATTCA CAGTATTTCC CGTGCTTCTA ATTCAGCTTG AAAGAGAGCG GGAGAGAATT
CAGAGGCTGA ATGTGATGCT GATCGATGTG ATTAAAAGAT GCGCAGGTGC TGCTTGA
|
|---|
| Protein sequence | MRPIDRKERL GCWIAKNPEL ILIAAVLLTL LSLHYAQQIE MHGMRTEDFV DEGSMLYQTY
EHLFKERFAT VSITVVIEGD DVTTPEVLKA MDRLAVHMES VPDVISVEGI SQIVKTSAEN
ELGRGCIPDE QELIDALLLK GDPRLLQNIL PDRKHTILSI ELPLTLTDEE REEVLHETEK
AVAMAEFPLG VGVIVTGDAA LGVAIKKEMS ENFGSLLGAS GVLMILALLL VFRHVNWPLL
PLPVVFLGII WTFGIMGLLK IPMTMISMSA FPILIGIGID YAIQFHNRIE EEFSKGGSIK
KAVVETVAHT APAVLIALAI TAAGFFSLFT SSVPMIRTFG VLCLIGLIMC YLSALFVGIT
VLYAAETSGN NRKNRSRGRD GDASETTVAE TATGRAVRSV VRFSLRRGPM ILLLALLLSL
AGVYSDTLVP VDTDFKNYMP QDLPPLVQFR HLVDIFGGSD ELNIIVQGDD ITDPKMLEWM
NEFGEYIIES RQQVYFVNSV ASYMRMLNNG SIPEDKTATR YLLGIMPSSM RDRYIDGHDT
AVMDINIGNA LRDLGEEGVD RLIKEMYKDV EWFGVPPGTS VVITGNLVVM TTVIEALTTG
RTEMTLFGLV VIFFILLLIY RDLIKATMPV LPMLVVIGWM GGVMYITGMK YTPLTATLGA
LILGVGSEYS ILMMERFYEE LKRCNDIDQA ISKASSSIGS ALVASGLTTV FGFGALITSP
FVITNNFGTV TVLAVIFALI TTFTVFPVLL IQLERERERI QRLNVMLIDV IKRCAGAA
|
|---|
| |