Gene Mthe_0638 details

Gene Information

• Locus tag: Mthe_0638
• ID: 4462278
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanosaeta thermophila PT
• Kingdom: Archaea
• Replicon accession: NC_008553
• Strand: +
• Start bp: 664105
• End bp: 665961
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 639699646
• Product: CRISPR-associated Csh1 family protein
• Protein accession: YP_843068
• Protein GI: 116753950
• TIGRFAM ID: [TIGR02556] CRISPR-associated protein, TM1802 family; [TIGR02591] CRISPR-associated protein, Csh1 family

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.0097245
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGATCC GTGTGATCGA GGCAGTAGCA AGAATTGGTA AGCAAAGAAT TGGTGAGCAT 
GCTCAGAGCG GTTGTGAGGA TATCCTGTAT TACATTGTGG AGAATCCAAA TCTCAATGGC 
GGTTACAACC ATGCTCTTGT TGTCACACTC GAGGAGAAGG ACGGAGATTT CTCCTACAGA 
GGGGTGGAGC TGGAGGAGCT CAAGGATTAC AGAAGATACC TGTACAAGGG GAAGAAGGGG 
AATGCCACCG ATGCCACCCC GACATGCAAG ATCGCAAAGG ATATCGAGAA AACATTCGAG 
AAAAAATTTC TGAGATGGTT TGATGGCATT GATTCTTCAG ATCTAAGCGG GGAAGAAAGA 
GCCACGCTGA AAAATATAAA GAATGTGTTA TTCTCAAACA AAGATAAAAT CTTTAAGGAG 
CTACAGGAGA AGCGATCTCA TCTCAAACAG AGAGAGAACT GCATAATAAC CCTTGGATTT 
GTGAAGGATG GTGATCTTAA ATACCTGGCG GATTATCCGG CGTTCAGAAA CGTTCTCCTC 
AAAAATAGCT GCGATCGGTT CTTCCGTAAA TACGGCGGCG AGTCCAGAGG AACGGATGCG 
CTCTGCTCTG TCTGCAAGGA GCAAAAGGAT GAGGTTTACG CATACGCCAT CCCCTGGCCG 
TTCCACACAT TCGACAAGCC CGGATTCATA GCAGGCGGGT TCAGGCAGTC TGATGCATGG 
AAGAACACGC CCGTCTGCTT AAACTGTGCG ATAAATCTCG ATGCGGGAAA GAAGTACATT 
GAGGAGAGCC TTGACTTCAG CTTCTACGGC TTCAGGTACC TTCTCATACC CAAGCTCATA 
ATCGGCGATG ACTACCAGGA GATCCTGGAT ATTCTGAGTG GTATGAAGAA AGAACTGAAG 
ATGAGCCGGA AGACCAGGAA CCGCATAACC GACGACGAGG ATGAGATCCT GGATATGGTG 
AAGGATCAGA AGGACTTCTT CAGCAACAGC CTGATGTTTT ATAAAAAGGA TAACTCCGCT 
TACAGGATAC TCCTTCACAT CGATGGCATT CTCCCATCCA GGTTGAGAAG GCTGTTCGAG 
GCCAAGGAGA GGGTTGAAGG TGCCTTCGGG ATATACAATG AGATGGTGCT ATCCGAAGAC 
AAAGGCAGGC TTATATTTGA TTTTGGCGTT CTGAGGCGGT TCTTCCCCAG GGAGTCAGGA 
AACGTTACAC ACGACAAGAT GTTTCTGGAA ATTGTCAACA GGATATTCGT GGGGAGGTAT 
GTGGATCGCC ATCTTCTGAT CTCATTCATG ATGAAGAGAA TCAGAGATGA TTTCGTGCAT 
GGGCGATCCA CGCTGATGAA CACGCTCAAC GGATTCATGC TTCTTCATTA TCTGAAGGAG 
CTGAATCTTC TGAAGGATCT TGAGGTAGAC AGAATGTCAG GAATTGTTCT CAAAAGAGAG 
GAGCTCGAGG CACTTCCTCT GGATAAGAGG GTTGAGAGGT TCTTCGAGGC GAACAGGGAG 
TTCTTTGACA GCGATGCGAA GAAGGCAACG TTTCTGGAAG GCGTGCTTGT GCAGAAGCTG 
CTGAACATCC AGTGGATGGA GAAGAATGCA AAGCCGTTCT ACACAAAGCT GCATGGGCTC 
AAGATGAACG AGGCCCTGAT CAAGAGGCTT CTTCCGGAGA TACAGAACAA GCTTGAGGAG 
TATGAGAAGA ACTACTACAG GGAGCTCGAG GCGATCATAG CGGAGCATTT CGTTCTTTCG 
GGCCGCGGGT GGAAGGAGAC AGATGATGAG CTGAGCTTCT ACTTCGTGCT CGGTATGAAC 
CTGCACGAGC TCTTCAGGGT GGATAAAGAG AAGGAAAAGA CGGAGGAAAC AGCATGA 

 

Protein sequence

MVIRVIEAVA RIGKQRIGEH AQSGCEDILY YIVENPNLNG GYNHALVVTL EEKDGDFSYR 
GVELEELKDY RRYLYKGKKG NATDATPTCK IAKDIEKTFE KKFLRWFDGI DSSDLSGEER 
ATLKNIKNVL FSNKDKIFKE LQEKRSHLKQ RENCIITLGF VKDGDLKYLA DYPAFRNVLL 
KNSCDRFFRK YGGESRGTDA LCSVCKEQKD EVYAYAIPWP FHTFDKPGFI AGGFRQSDAW 
KNTPVCLNCA INLDAGKKYI EESLDFSFYG FRYLLIPKLI IGDDYQEILD ILSGMKKELK 
MSRKTRNRIT DDEDEILDMV KDQKDFFSNS LMFYKKDNSA YRILLHIDGI LPSRLRRLFE 
AKERVEGAFG IYNEMVLSED KGRLIFDFGV LRRFFPRESG NVTHDKMFLE IVNRIFVGRY 
VDRHLLISFM MKRIRDDFVH GRSTLMNTLN GFMLLHYLKE LNLLKDLEVD RMSGIVLKRE 
ELEALPLDKR VERFFEANRE FFDSDAKKAT FLEGVLVQKL LNIQWMEKNA KPFYTKLHGL 
KMNEALIKRL LPEIQNKLEE YEKNYYRELE AIIAEHFVLS GRGWKETDDE LSFYFVLGMN 
LHELFRVDKE KEKTEETA